feat: Common functions for interfacing with python-irodsclient

[sellth]

fixes #200

• add new class iRODSTransfer
• put files to iRODS
• trigger remote checksum computation
• fix tests
• also get files from iRODS
• create common class with utility functions
• use iRODS session manager implemented in irods.check
• create sub-collections (recursive put)
• rsync-like functionality (--sync?) which skips files present on remote
• file progress as (n / n_total)
• check if session is properly handled by contextmanager
• handle CAT_PASSWORD_EXPIRED for long transfers

Note: Uploads cannot be cancelled by KeyboardInterrupt (caused by multiprocessing in irods client)

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (9026388) 77.84% compared to head (bab45a0) 79.84%.
Report is 1 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #202      +/-   ##
==========================================
+ Coverage   77.84%   79.84%   +2.00%     
==========================================
  Files          98      100       +2     
  Lines        7330     7701     +371     
==========================================
+ Hits         5706     6149     +443     
+ Misses       1624     1552      -72     

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[Nicolai-vKuegelgen]

Looks very good overall only a few minor comments.

Would be good if someone who understands mock testing in python better than me could review that part.

[Nicolai-vKuegelgen]

LGTM

though as of now this will be unused right?
Should pick a 1-2 functions and implement it there and then start rolling out where needed/possible

[sellth]

I could dress up my "SODAR ingest anything" function as a pilot use case, but maybe we want to separate those PRs? Might be worth implementing the get functionality though.