No more types genomics

ci/recipe/meta.yaml

@@ -26,7 +26,6 @@ requirements:
     - scikit-learn {{ scikit_learn }}
     - scikit-bio {{ scikit_bio }}
     - q2-types {{ qiime2_epoch }}.*
-    - q2-types-genomics >2023.2
     - q2-feature-classifier {{ qiime2_epoch }}.*
     - qiime2 {{ qiime2_epoch }}.*
 

rescript/ncbi_datasets.py

@@ -21,7 +21,7 @@
 from multiprocessing import Manager
 from ncbi.datasets import ApiException
 from q2_types.feature_data import DNAFASTAFormat
-from q2_types_genomics.genome_data import (LociDirectoryFormat,
+from q2_types.genome_data import (LociDirectoryFormat,
                                            ProteinsDirectoryFormat)
 
 from rescript.ncbi import get_taxonomies, _default_ranks

rescript/plugin_setup.py

@@ -8,7 +8,7 @@
 
 import importlib
 
-from q2_types_genomics.genome_data import GenomeData, Loci, Proteins
+from q2_types.genome_data import GenomeData, Loci, Proteins
 from qiime2.core.type import TypeMatch
 from qiime2.plugin import (Str, Plugin, Choices, List, Citations, Range, Int,
                            Float, Visualization, Bool, TypeMap, Metadata,

rescript/tests/test_ncbi_datasets.py

@@ -13,7 +13,7 @@
 import pandas as pd
 from ncbi.datasets import GenomeApi, ApiClient, ApiException
 from q2_types.feature_data import DNAFASTAFormat
-from q2_types_genomics.genome_data import (LociDirectoryFormat,
+from q2_types.genome_data import (LociDirectoryFormat,
                                            ProteinsDirectoryFormat)
 from qiime2.plugin.testing import TestPluginBase
 from rescript.ncbi import _default_ranks