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@cbg-ethz

Computational Biology Group (CBG)

Beerenwinkel Lab at ETH Zurich

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  1. V-pipe V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    Jupyter Notebook 132 46

Repositories

Showing 10 of 102 repositories
  • covvfit Public

    Fitness estimates of SARS-CoV-2 variants

    cbg-ethz/covvfit’s past year of commit activity
    Python 0 MIT 0 4 1 Updated Nov 15, 2024
  • oncotreeVIS Public

    An interactive graphical user interface for visualizing mutation tree cohorts.

    cbg-ethz/oncotreeVIS’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Nov 15, 2024
  • tupro-evolutionary-landscapes Public
    cbg-ethz/tupro-evolutionary-landscapes’s past year of commit activity
    Python 0 0 0 0 Updated Nov 15, 2024
  • sr2silo Public

    Wrangling short-read sequencing data for import into SILO

    cbg-ethz/sr2silo’s past year of commit activity
    Python 0 MIT 0 2 1 Updated Nov 14, 2024
  • scDEF Public

    Deep exponential families for single-cell data.

    cbg-ethz/scDEF’s past year of commit activity
    Python 20 1 0 0 Updated Nov 13, 2024
  • VILOCA Public

    VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data

    cbg-ethz/VILOCA’s past year of commit activity
    Python 14 GPL-3.0 0 0 1 Updated Nov 10, 2024
  • oncotree2vec Public

    A method for embedding and clustering of tumor mutation trees.

    cbg-ethz/oncotree2vec’s past year of commit activity
    JavaScript 4 0 0 0 Updated Nov 8, 2024
  • vpipe-biohack24-frontend Public

    Cloudification of V-Pipe: Frontend for the Biohackathon 2024

    cbg-ethz/vpipe-biohack24-frontend’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 7, 2024
  • lollipop-in-cloud Public

    On the fly variant deconvolution running in the cloud for on demand user requests.

    cbg-ethz/lollipop-in-cloud’s past year of commit activity
    Python 0 0 0 0 Updated Nov 7, 2024
  • mt-SCITE Public

    Tree inference from mitochondrial mutations

    cbg-ethz/mt-SCITE’s past year of commit activity
    Jupyter Notebook 4 1 0 0 Updated Nov 6, 2024
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