Snakedeploy Tests #5
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| name: Run tutorials | |
| on: | |
| push: | |
| pull_request: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: ${{ github.ref != 'refs/heads/main' }} | |
| jobs: | |
| build_n_push: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| lfs: false | |
| - name: Install conda environment dependencies | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-version: latest | |
| miniforge-variant: Mambaforge | |
| python-version: "3.11" | |
| mamba-version: "*" | |
| channels: conda-forge,bioconda #,defaults # see: https://github.com/conda-forge/status/issues/144 | |
| channel-priority: strict | |
| activate-environment: JupyText | |
| auto-update-conda: true | |
| environment-file: tests/conda_tutorials_env.yaml | |
| - name: Setup Jupyter kernel | |
| run: | | |
| python -m ipykernel install --user | |
| - name: Run notebooks | |
| working-directory: ./docs | |
| run: ./convert.sh branch | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: JupyterNotebooks | |
| path: ./docs/*.ipynb | |
| # - name: Publish | |
| # uses: peaceiris/actions-gh-pages@v3 | |
| # with: | |
| # github_token: ${{ secrets.GITHUB_TOKEN }} | |
| # publish_dir: ./docs |