Bugfix/Optimise: move indexing out of align group #20

	name: Run tutorials

	on:
	push:
	pull_request:

	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: ${{ github.ref != 'refs/heads/main' }}

	jobs:
	build_n_push:
	runs-on: ubuntu-latest

	defaults:
	run:
	shell: bash -l {0}

	steps:
	- name: Checkout repository
	uses: actions/checkout@v3
	with:
	lfs: false

	- name: Install conda environment dependencies
	uses: conda-incubator/setup-miniconda@v2
	with:
	miniforge-version: latest
	miniforge-variant: Mambaforge
	python-version: "3.11"
	mamba-version: "*"
	channels: conda-forge,bioconda #,defaults # see: https://github.com/conda-forge/status/issues/144
	channel-priority: strict
	activate-environment: JupyText
	auto-update-conda: true
	environment-file: tests/conda_tutorials_env.yaml

	- name: Setup Jupyter kernel
	run: \|
	python -m ipykernel install --user

	- name: Run notebooks
	working-directory: ./docs
	run: ./convert.sh branch

	- uses: actions/upload-artifact@v3
	with:
	name: JupyterNotebooks
	path: ./docs/*.ipynb
	# - name: Publish
	# uses: peaceiris/actions-gh-pages@v3
	# with:
	# github_token: ${{ secrets.GITHUB_TOKEN }}
	# publish_dir: ./docs

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