remove isfile() tst

cbg-ethz · Apr 23, 2024 · c3553eb · c3553eb
1 parent 3711f38
commit c3553eb
Showing 1 changed file with 0 additions and 3 deletions.
diff --git a/resources/auxiliary_workflows/benchmark/resources/local_haplotype_setup/workflow/Snakefile b/resources/auxiliary_workflows/benchmark/resources/local_haplotype_setup/workflow/Snakefile
@@ -383,7 +383,6 @@ use rule performance_measures_local from realdata as realdata_performance_measur
             for method in realdata.method_list_local + realdata.method_list_global
             if method not in ["cliquesnv_local_haplo", "cliquesnv_local_haplo_tf0.01"]
             for replicate in range(realdata.config["replicate_count"])
-            if os.path.isfile(f"results/realdata/method_runs/{params}/{method}/replicates/{replicate}/snvs_.vcf")
         ],
         # we also include `method_list_local` to align with `vcf_list`
         groundtruth_list=[
@@ -392,15 +391,13 @@ use rule performance_measures_local from realdata as realdata_performance_measur
             for method in realdata.method_list_local + realdata.method_list_global
             if method not in ["cliquesnv_local_haplo", "cliquesnv_local_haplo_tf0.01"]
             for replicate in range(realdata.config["replicate_count"])
-            if os.path.isfile(f"results/realdata/method_runs/{params}/{method}/replicates/{replicate}/snvs_.vcf")
         ],
         benchmark_list=[
             f"results/realdata/method_runs/{params}/{method}/replicates/{replicate}/benchmark_.tsv"
             for params in realdata.paramspace.instance_patterns
             for method in realdata.method_list_local + realdata.method_list_global
             if method not in ["cliquesnv_local_haplo", "cliquesnv_local_haplo_tf0.01"]
             for replicate in range(realdata.config["replicate_count"])
-            if os.path.isfile(f"results/realdata/method_runs/{params}/{method}/replicates/{replicate}/snvs_.vcf")
         ],