BugFix: Rule dehuman is not defined in this workflow.

- hasattr(rules, "dehuman"): doesn't work anymore
cbg-ethz · Sep 6, 2023 · ee97b7b · ee97b7b
1 parent 6b37cd4
commit ee97b7b
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Showing 2 changed files with 6 additions and 6 deletions.
diff --git a/workflow/Snakefile b/workflow/Snakefile
@@ -79,3 +79,9 @@ if config.output["dehumanized_raw_reads"]:
 if config.output["upload"]:
 
     include: "rules/publish.smk"
+
+
+if config.output["dehumanized_raw_reads"] and config.output["upload"]:
+
+    # only if dehuman.smk and publish.smk are both included
+    ruleorder: dehuman > checksum
diff --git a/workflow/rules/publish.smk b/workflow/rules/publish.smk
@@ -162,9 +162,3 @@ rule checksum:
 
 
 ruleorder: unfiltered_cram > checksum
-
-
-if hasattr(rules, "dehuman"):
-
-    # only if dehuman.smk is included
-    ruleorder: dehuman > checksum