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Likelihood #21

Merged
merged 34 commits into from
Oct 17, 2023
Merged

Likelihood #21

merged 34 commits into from
Oct 17, 2023

Commits on Sep 22, 2023

  1. Add files for listing children and subtrees

    @laukeller
    laukeller committed Sep 22, 2023
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Commits on Sep 25, 2023

  1. added simulation of trees and comparison plots (not correct yet)

    @laukeller
    laukeller committed Sep 25, 2023
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Commits on Sep 26, 2023

  1. removed plots and warmup directory, added plotting/csv related files … 

    …& _simulate.py
    @laukeller
    laukeller committed Sep 26, 2023
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Commits on Sep 27, 2023

  1. Merge branch 'main' into warmup

    @pawel-czyz
    pawel-czyz authored Sep 27, 2023
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  2. changed _simulate.py, write_csv.py and created a few unit tests

    @laukeller
    laukeller committed Sep 27, 2023
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  3. Merge branch 'warmup' of github.com:cbg-ethz/pMHN into warmup

    @laukeller
    laukeller committed Sep 27, 2023
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  4. changed comment in _simulate.py

    @laukeller
    laukeller committed Sep 27, 2023
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  5. minor changes

    @laukeller
    laukeller committed Sep 27, 2023
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Commits on Sep 28, 2023

  1. moved files to warmup dir

    @laukeller
    laukeller committed Sep 28, 2023
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  2. remove not needed files

    @laukeller
    laukeller committed Sep 28, 2023
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  3. change: draw new sampling time if tree is discarded, mean_sampling_ti… 

    …me now passed as an argument
    @laukeller
    laukeller committed Sep 28, 2023
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  4. reformatted files with black

    @laukeller
    laukeller committed Sep 28, 2023
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  5. changed unit tests

    @laukeller
    laukeller committed Sep 28, 2023
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Commits on Sep 29, 2023

  1. reformat with black

    @laukeller
    laukeller committed Sep 29, 2023
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  2. Merge branch 'main' of github.com:cbg-ethz/pMHN 

    PR approved?
    @laukeller
    laukeller committed Sep 29, 2023
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  3. Merge branch 'warmup' 

    PR approved?
    @laukeller
    laukeller committed Sep 29, 2023
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Commits on Sep 30, 2023

  1. Remove poetry.lock

    @pawel-czyz
    pawel-czyz committed Sep 30, 2023
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  2. fixed ruff errors

    @laukeller
    laukeller committed Sep 30, 2023
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  3. fixed ruff errors

    @laukeller
    laukeller committed Sep 30, 2023
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  4. Merge branch 'warmup' of github.com:cbg-ethz/pMHN into warmup

    @laukeller
    laukeller committed Sep 30, 2023
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  5. Merge branch 'warmup' 

    all errors should be fixed now.
    @laukeller
    laukeller committed Sep 30, 2023
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  6. pyright fixed

    @laukeller
    laukeller committed Sep 30, 2023
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  7. Merge branch 'warmup'

    @laukeller
    laukeller committed Sep 30, 2023
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Commits on Oct 4, 2023

  1. modified _backend and added _tree_utils, created unit tests for both

    @laukeller
    laukeller committed Oct 4, 2023
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Commits on Oct 7, 2023

  1. added files for likelihood comparison, changed absolute paths to rela… 

    …tive paths, created modified_io, added 1e-10 to return value of likelihood function
    @laukeller
    laukeller committed Oct 7, 2023
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  2. small change

    @laukeller
    laukeller committed Oct 7, 2023
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Commits on Oct 8, 2023

  1. added likelihood tests, modified test_tree_utils.py

    @laukeller
    laukeller committed Oct 8, 2023
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Commits on Oct 9, 2023

  1. minor changes

    @laukeller
    laukeller committed Oct 9, 2023
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  2. minor change

    @laukeller
    laukeller committed Oct 9, 2023
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Commits on Oct 13, 2023

  1. implemented suggestions from pawel

    @laukeller
    laukeller committed Oct 13, 2023
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Commits on Oct 16, 2023

  1. Merge branch 'main' into likelihood

    @laurenzkeller
    laurenzkeller authored Oct 16, 2023
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Commits on Oct 17, 2023

  1. changed io and test_io

    @laukeller
    laukeller committed Oct 17, 2023
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  2. Merge branch 'likelihood' of github.com:cbg-ethz/pMHN into likelihood

    @laukeller
    laukeller committed Oct 17, 2023
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  3. deleted files

    @laukeller
    laukeller committed Oct 17, 2023
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