Deprecations in BioPython #16
Workflow file for this run
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| name: Publish Python 🐍 distributions 📦 to PyPI and TestPyPI | |
| # source: | |
| # - https://packaging.python.org/en/latest/guides/publishing-package-distribution-releases-using-github-actions-ci-cd-workflows/ | |
| # - https://docs.pypi.org/trusted-publishers/using-a-publisher/ | |
| # - https://github.com/marketplace/actions/pypi-publish | |
| on: | |
| push: | |
| branches: | |
| - master | |
| tags: | |
| - '*.*.*' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: ${{ github.ref != 'refs/heads/main' }} | |
| jobs: | |
| build_dist: | |
| name: Build Python 🐍 distributions 📦 | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| lfs: false | |
| # NOTE to save on bandwidth costs, GitHub Action will not use GitHub's own LFS | |
| - name: Fetch test-data | |
| # NOTE to save on bandwidth costs, pull data from BSSE's GitLab LFS instead | |
| run: | | |
| git config --file .lfsconfig lfs.url "https://git.bsse.ethz.ch/cbg/viruses/smallgenomeutilities.git/info/lfs" | |
| git lfs install | |
| git lfs pull | |
| git lfs checkout | |
| - name: Git archive | |
| run: | | |
| git archive --format=tar --prefix='smgu/' HEAD | (cd /tmp; tar xf -) | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.x" | |
| - name: Install pypa/build | |
| run: >- | |
| python3 -m | |
| pip install | |
| build | |
| --user | |
| - name: Build a binary wheel and a source tarball from the Git archive | |
| run: >- | |
| python3 -m | |
| build | |
| --sdist | |
| --wheel | |
| --outdir dist/ | |
| /tmp/smgu/ | |
| - name: Archive distributions 📦 | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: dist | |
| path: | | |
| dist | |
| - name: Release | |
| uses: softprops/action-gh-release@v1 | |
| if: startsWith(github.ref, 'refs/tags/') | |
| with: | |
| draft: true | |
| files: | | |
| dist/* | |
| # publish_testpypi: | |
| # name: Publish Python 🐍 distributions 📦 to TestPyPI | |
| # runs-on: ubuntu-latest | |
| # | |
| # needs: build_dist | |
| # | |
| # permissions: | |
| # # IMPORTANT: this permission is mandatory for trusted publishing | |
| # id-token: write | |
| # | |
| # environment: | |
| # name: testpypi | |
| # url: https://test.pypi.org/p/smallgenomeutilities | |
| # | |
| # steps: | |
| # - name: Fetch distributions 📦 | |
| # uses: actions/download-artifact@v3 | |
| # with: | |
| # name: dist | |
| # path: dist | |
| # | |
| # - name: Publish distribution 📦 to Test PyPI | |
| # uses: pypa/gh-action-pypi-publish@release/v1 | |
| # with: | |
| # repository-url: https://test.pypi.org/legacy/ | |
| # skip-existing: true | |
| publish_pypi: | |
| if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') | |
| name: Publish Python 🐍 distributions 📦 to PyPI | |
| runs-on: ubuntu-latest | |
| needs: | |
| - build_dist | |
| # - publish_testpypi | |
| permissions: | |
| # IMPORTANT: this permission is mandatory for trusted publishing | |
| id-token: write | |
| environment: | |
| name: pypi | |
| url: https://pypi.org/p/smallgenomeutilities | |
| steps: | |
| - name: Fetch distributions 📦 | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: dist | |
| path: dist | |
| - name: Publish distribution 📦 to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| print-hash: true |