[temp workaroun] pip install in conda

- avoid recompiling pysam and co when mamba install
cbg-ethz · Jun 5, 2024 · 739b8a5 · 739b8a5
1 parent b1c061c
commit 739b8a5
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/pyproject.toml b/pyproject.toml
@@ -32,8 +32,8 @@ classifiers=[
 dependencies = [
     "biopython ==1.83",
     "bcbio-gff",
-    "pysam >=0.16",
-    "pysamstats",
+    # "pysam >=0.16",
+    # "pysamstats",
     "pandas",
     "numpy",
     "scipy",
@@ -71,6 +71,7 @@ script-files = [
     "scripts/min_coverage",
     "scripts/minority_freq",
     "scripts/pair_sequences",
+    "scripts/paired_end_read_merger",
     "scripts/predict_num_reads",
     "scripts/prepare_primers",
     "scripts/remove_gaps_msa",