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feature: add paired read merging on aligments #125

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One requirement for efficient storage in a silo is the implementation of read pairing and merging.

This PR shall implement this using code developed in the group as part of smallgenomeutiities.

@gordonkoehn gordonkoehn linked an issue Feb 27, 2025 that may be closed by this pull request
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Copied over the script for now as we cannot properly import it right now.

@gordonkoehn gordonkoehn self-assigned this Feb 28, 2025
@gordonkoehn gordonkoehn changed the base branch from main to dev March 7, 2025 09:03
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Read Pairing & Merge
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