Census LTS Compatibility #402
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Census LTS Compatibility # Compat test between Census package and LTS builds | |
| on: | |
| schedule: | |
| - cron: "30 1 * * *" | |
| workflow_dispatch: # used for debugging or manual validation | |
| env: | |
| CELLXGENE_CENSUS_USERAGENT: "CZI-test" | |
| jobs: | |
| python-compat-check: | |
| name: Python LTS compatibility check | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.11"] | |
| census-build-version: # Add additional LTS releases as they occur | |
| - "latest" | |
| - "stable" | |
| - "2023-12-15" | |
| - "2023-07-25" | |
| - "2023-05-15" | |
| py-pkg-version: | |
| - "~=1.10.0" | |
| - "~=1.11.0" | |
| - "~=1.12.0" | |
| - "~=1.13.0" | |
| - "head-of-main" | |
| runs-on: ${{matrix.os}} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install -U pip setuptools wheel | |
| GIT_CLONE_PROTECTION_ACTIVE=false pip install -r ./api/python/cellxgene_census/scripts/requirements-dev.txt | |
| if [ ${{matrix.py-pkg-version}} == "head-of-main" ]; then | |
| pip install -e ./api/python/cellxgene_census/ | |
| else | |
| pip install -U cellxgene_census${{ matrix.py-pkg-version }} | |
| fi | |
| - name: Test with pytest (API, main tests) | |
| run: | | |
| PYTHONPATH=. pytest -v -rP -m lts_compat_check ./api/python/cellxgene_census/tests/test_lts_compat.py --census_version ${{ matrix.census-build-version }} |