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Issues list

DoesNotExistError: 's3://cellxgene-census-public-us-west-2/cell-census/2023-12-15/soma/' does not exist bug Something isn't working
#1313 opened Nov 13, 2024 by yabeykoon
3
Running the geneformer example results in KeyError bug Something isn't working
#1312 opened Nov 13, 2024 by ddemaeyer
1
Specify the Census search space with an obs_value_filter parameter in find_nearest_obs 2024-q4 P0 Priority 0 - Critical, fix ASAP! Priority backlog items user request
#1305 opened Oct 23, 2024 by pablo-gar
1
Census LTS update 2024-q4 P0 Priority 0 - Critical, fix ASAP!
#1303 opened Oct 18, 2024 by cathystoli
@ivirshup
Social previews for the docsite documentation Improvements or additions to documentation python api Related to the API user request
#1295 opened Oct 2, 2024 by ivirshup
Stop linking release cycles of R and Python packages tech
#1293 opened Oct 1, 2024 by ivirshup
1 of 2 tasks
feature_dataset_presence_matrix should include genes with 0 counts bug Something isn't working census builder Related to the census builder tool
#1284 opened Sep 20, 2024 by ebezzi
3
differential expression - memento user request
#1282 opened Sep 17, 2024 by MatthiasBeyens
Identical values reported for "var.nnz" and "var.n_measured_obs" for different datasets retrieved via get_anndata() bug Something isn't working
#1281 opened Sep 16, 2024 by khughitt
@ivirshup
1
[R] Remove tiledb dependency for R package r api tech
#1274 opened Sep 5, 2024 by ivirshup
2 tasks
1
Adding a dataset of tissue_type = "organoid" to Census scVI embedding P1 Priority 1 - Improvement with wide impact, fix within 1 week user request
#1271 opened Sep 4, 2024 by kavithakrishna1
Network Issue FAQs documentation Improvements or additions to documentation network P1 Priority 1 - Improvement with wide impact, fix within 1 week
#1265 opened Aug 19, 2024 by cathystoli
@ivirshup
1
Stop blocking Boroni collection bug Something isn't working data Related to the data in census dp Data Platform P0 Priority 0 - Critical, fix ASAP!
#1263 opened Aug 15, 2024 by ivirshup
2 of 3 tasks
[R] cellxgene-census PermanentRedirect S3 error bug Something isn't working upstream
#1261 opened Aug 14, 2024 by JHYSiu
17
Current stable data release has fewer cancer cells than "2023-05-15" data Related to the data in census
#1255 opened Jul 31, 2024 by YubinXie
11
tools/census_contrib/pyproject.toml is super out of date bug Something isn't working P2 Priority 2 - Improvement with narrower impact, fix within a month
#1254 opened Jul 30, 2024 by ivirshup
@ivirshup
TimeoutError with cellxgene_census.get_anndata() needs clarification network
#1253 opened Jul 30, 2024 by LysSanzMoreta
7
Add function for listing available h5ads for download Priority backlog items python api Related to the API r api user request
#1251 opened Jul 24, 2024 by ivirshup
3
[misc] user-agent tagging in R analytics Work relating to analytics support r api
#1249 opened Jul 22, 2024 by pablo-gar
4 tasks
Bump tiledbsoma version on builder to 1.12.3 blocked Issue cannot be completed due to an external dependency. effort-s P0 Priority 0 - Critical, fix ASAP!
#1243 opened Jul 12, 2024 by ivirshup
@ivirshup
11
Execution Time for highly_variable_genes Function performance
#1242 opened Jul 12, 2024 by ckrilow
2
Support numpy 2 user request
#1240 opened Jul 12, 2024 by ivirshup
Add live Census tests for PyTorch loaders P1 Priority 1 - Improvement with wide impact, fix within 1 week pytorch tileDB work
#1222 opened Jul 3, 2024 by ebezzi
[pytorch] Add encoders for X P0 Priority 0 - Critical, fix ASAP! pytorch tileDB work user request
#1219 opened Jul 1, 2024 by ebezzi
1
embeddings functions do not support same values for organisms as main API bug Something isn't working effort-xs P2 Priority 2 - Improvement with narrower impact, fix within a month
#1205 opened Jun 24, 2024 by ivirshup
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