Build and Deploy Docsite #98
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build and Deploy Docsite | |
| on: | |
| push: | |
| tags: | |
| - '*' | |
| workflow_dispatch: # Used to make post-release docfixes | |
| permissions: | |
| contents: write | |
| jobs: | |
| build-and-deploy: | |
| concurrency: ci-${{ github.ref }} | |
| runs-on: single-cell-8c64g-runner | |
| steps: | |
| - name: Checkout 🛎️ | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Install Python deps 🔧 | |
| run: | | |
| python -m pip install -U pip setuptools wheel | |
| pip install -r ./api/python/cellxgene_census/scripts/requirements-dev.txt | |
| pip install -r ./docs/requirements.txt | |
| pip install -e './api/python/cellxgene_census/[experimental]' | |
| mkdir -p docsite | |
| touch docsite/.nojekyll | |
| - name: Install Pandoc | |
| run: | | |
| sudo apt-get install -y pandoc | |
| - name: Install misc deps | |
| run: | | |
| sudo apt-get install -y libcairo2-dev rsync | |
| - name: Build Sphinx website | |
| run: | | |
| cd docs/ | |
| make clean && make html | |
| cp -r _build/html/* ../docsite/. | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| extra-repositories: https://tiledb-inc.r-universe.dev | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| working-directory: ./api/r/cellxgene.census | |
| extra-repositories: https://tiledb-inc.r-universe.dev | |
| extra-packages: any::rcmdcheck, any::styler, any::roxygen2, any::pkgdown, any::BiocManager, | |
| needs: check | |
| cache: true | |
| - name: Build pkgdown website | |
| run: | | |
| cd api/r/cellxgene.census | |
| Rscript -e 'BiocManager::install("scater")' | |
| Rscript -e 'pkgdown::build_site()' | |
| cd ../../../ | |
| mkdir -p docsite/r | |
| cp -r api/r/cellxgene.census/docs/* docsite/r/. | |
| - name: Deploy 🚀 | |
| uses: JamesIves/github-pages-deploy-action@v4 | |
| with: | |
| folder: docsite # The folder the action should deploy. | |
| branch: gh-pages-test |