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_autosummary/cellxgene_census.download_source_h5ad.html

@@ -123,13 +123,6 @@
             </a>
 
 
-
-
-                <div class="version">
-                    1.16.2
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 <div role="search">
@@ -223,7 +216,7 @@
 <h1>cellxgene_census.download_source_h5ad<a class="headerlink" href="#cellxgene-census-download-source-h5ad" title="Permalink to this heading"></a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cellxgene_census.download_source_h5ad">
-<span class="sig-prename descclassname"><span class="pre">cellxgene_census.</span></span><span class="sig-name descname"><span class="pre">download_source_h5ad</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dataset_id</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><span class="pre">str</span></a></span></em>, <em class="sig-param"><span class="n"><span class="pre">to_path</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><span class="pre">str</span></a></span></em>, <em class="sig-param"><span class="o"><span class="pre">*</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">census_version</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><span class="pre">str</span></a></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">'stable'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">progress_bar</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.12)"><span class="pre">bool</span></a></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">&#x2192;</span> <span class="sig-return-typehint"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.12)"><span class="pre">None</span></a></span></span><a class="headerlink" href="#cellxgene_census.download_source_h5ad" title="Permalink to this definition"></a></dt>
+<span class="sig-prename descclassname"><span class="pre">cellxgene_census.</span></span><span class="sig-name descname"><span class="pre">download_source_h5ad</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dataset_id</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.13)"><span class="pre">str</span></a></span></em>, <em class="sig-param"><span class="n"><span class="pre">to_path</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.13)"><span class="pre">str</span></a></span></em>, <em class="sig-param"><span class="o"><span class="pre">*</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">census_version</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.13)"><span class="pre">str</span></a></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">'stable'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">progress_bar</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3/library/functions.html#bool" title="(in Python v3.13)"><span class="pre">bool</span></a></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">True</span></span></em><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">&#x2192;</span> <span class="sig-return-typehint"><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.13)"><span class="pre">None</span></a></span></span><a class="headerlink" href="#cellxgene_census.download_source_h5ad" title="Permalink to this definition"></a></dt>
 <dd><p>Download the source H5AD dataset, for the given <cite>dataset_id</cite>, to the user-specified
 file name.</p>
 <dl class="field-list simple">
@@ -236,7 +229,7 @@ <h1>cellxgene_census.download_source_h5ad<a class="headerlink" href="#cellxgene-
 </ul>
 </dd>
 <dt class="field-even">Raises<span class="colon">:</span></dt>
-<dd class="field-even"><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#ValueError" title="(in Python v3.12)"><strong>ValueError</strong></a> – if the path already exists (i.e., will not overwrite an existing file), or is not a file.</p>
+<dd class="field-even"><p><a class="reference external" href="https://docs.python.org/3/library/exceptions.html#ValueError" title="(in Python v3.13)"><strong>ValueError</strong></a> – if the path already exists (i.e., will not overwrite an existing file), or is not a file.</p>
 </dd>
 </dl>
 <p class="rubric">Lifecycle</p>

_autosummary/cellxgene_census.experimental.get_all_available_embeddings.html

@@ -123,13 +123,6 @@
             </a>
 
 
-
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 <div role="search">
@@ -224,7 +217,7 @@
 <h1>cellxgene_census.experimental.get_all_available_embeddings<a class="headerlink" href="#cellxgene-census-experimental-get-all-available-embeddings" title="Permalink to this heading"></a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cellxgene_census.experimental.get_all_available_embeddings">
-<span class="sig-prename descclassname"><span class="pre">cellxgene_census.experimental.</span></span><span class="sig-name descname"><span class="pre">get_all_available_embeddings</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">census_version</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><span class="pre">str</span></a></span></em><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">&#x2192;</span> <span class="sig-return-typehint"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.12)"><span class="pre">list</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.12)"><span class="pre">dict</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><span class="pre">str</span></a><span class="p"><span class="pre">,</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.12)"><span class="pre">Any</span></a><span class="p"><span class="pre">]</span></span><span class="p"><span class="pre">]</span></span></span></span><a class="headerlink" href="#cellxgene_census.experimental.get_all_available_embeddings" title="Permalink to this definition"></a></dt>
+<span class="sig-prename descclassname"><span class="pre">cellxgene_census.experimental.</span></span><span class="sig-name descname"><span class="pre">get_all_available_embeddings</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">census_version</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.13)"><span class="pre">str</span></a></span></em><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">&#x2192;</span> <span class="sig-return-typehint"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.13)"><span class="pre">list</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#dict" title="(in Python v3.13)"><span class="pre">dict</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.13)"><span class="pre">str</span></a><span class="p"><span class="pre">,</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/typing.html#typing.Any" title="(in Python v3.13)"><span class="pre">Any</span></a><span class="p"><span class="pre">]</span></span><span class="p"><span class="pre">]</span></span></span></span><a class="headerlink" href="#cellxgene_census.experimental.get_all_available_embeddings" title="Permalink to this definition"></a></dt>
 <dd><p>Return a dictionary of all available embeddings for a given Census version.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>

_autosummary/cellxgene_census.experimental.get_all_census_versions_with_embedding.html

@@ -123,13 +123,6 @@
             </a>
 
 
-
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-                    1.16.2
-                </div>
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-
 
 
 <div role="search">
@@ -224,7 +217,7 @@
 <h1>cellxgene_census.experimental.get_all_census_versions_with_embedding<a class="headerlink" href="#cellxgene-census-experimental-get-all-census-versions-with-embedding" title="Permalink to this heading"></a></h1>
 <dl class="py function">
 <dt class="sig sig-object py" id="cellxgene_census.experimental.get_all_census_versions_with_embedding">
-<span class="sig-prename descclassname"><span class="pre">cellxgene_census.experimental.</span></span><span class="sig-name descname"><span class="pre">get_all_census_versions_with_embedding</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">embedding_name</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><span class="pre">str</span></a></span></em>, <em class="sig-param"><span class="n"><span class="pre">organism</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><span class="pre">str</span></a></span></em>, <em class="sig-param"><span class="n"><span class="pre">embedding_type</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><span class="pre">str</span></a><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.12)"><span class="pre">None</span></a></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">'obs_embedding'</span></span></em><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">&#x2192;</span> <span class="sig-return-typehint"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.12)"><span class="pre">list</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.12)"><span class="pre">str</span></a><span class="p"><span class="pre">]</span></span></span></span><a class="headerlink" href="#cellxgene_census.experimental.get_all_census_versions_with_embedding" title="Permalink to this definition"></a></dt>
+<span class="sig-prename descclassname"><span class="pre">cellxgene_census.experimental.</span></span><span class="sig-name descname"><span class="pre">get_all_census_versions_with_embedding</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">embedding_name</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.13)"><span class="pre">str</span></a></span></em>, <em class="sig-param"><span class="n"><span class="pre">organism</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.13)"><span class="pre">str</span></a></span></em>, <em class="sig-param"><span class="n"><span class="pre">embedding_type</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.13)"><span class="pre">str</span></a><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><a class="reference external" href="https://docs.python.org/3/library/constants.html#None" title="(in Python v3.13)"><span class="pre">None</span></a></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">'obs_embedding'</span></span></em><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">&#x2192;</span> <span class="sig-return-typehint"><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#list" title="(in Python v3.13)"><span class="pre">list</span></a><span class="p"><span class="pre">[</span></span><a class="reference external" href="https://docs.python.org/3/library/stdtypes.html#str" title="(in Python v3.13)"><span class="pre">str</span></a><span class="p"><span class="pre">]</span></span></span></span><a class="headerlink" href="#cellxgene_census.experimental.get_all_census_versions_with_embedding" title="Permalink to this definition"></a></dt>
 <dd><p>Get a list of all census versions that contain a specific embedding.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>