Merge branch 'main' into mlin/similarity-search-api-optimize-predict …

…(broken mypy)
chanzuckerberg · Sep 4, 2024 · cd16bd1 · cd16bd1
2 parents aad1f0d + 60c12f6
commit cd16bd1
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diff --git a/.github/workflows/close-stale-prs.yml b/.github/workflows/close-stale-prs.yml
diff --git a/api/python/notebooks/api_demo/census_embedding_search.ipynb b/api/python/notebooks/api_demo/census_embedding_search.ipynb
diff --git a/docs/_templates/layout.html b/docs/_templates/layout.html
@@ -136,8 +136,11 @@
                       </span>
                       <span class="navbar-cxg-link">
                         <a class="navbar-cxg-anchor" href="https://cellxgene.cziscience.com/cellguide">Cell Guide</a>
+                      </span>
+                      <span class="navbar-cxg-link">
+                        <a class="navbar-cxg-anchor" href="https://cellxgene.cziscience.com/differential-expression">Differential Expression</a>
                         <div style="height: 16px!important; display: flex;">
-                          <span class="beta">BETA</span>
+                          <span class="beta">NEW</span>
                         </div>
                       </span>
                     </span>

diff --git a/docs/cellxgene_census_docsite_data_release_info.md b/docs/cellxgene_census_docsite_data_release_info.md
@@ -1,6 +1,6 @@
 # Census data releases
 
-**Last edited**: December 15th, 2023.
+**Last edited**: July 8th, 2024.
 
 **Contents:**
 

diff --git a/tools/cellxgene_census_builder/dataset_blocklist.txt b/tools/cellxgene_census_builder/dataset_blocklist.txt
@@ -3,3 +3,4 @@ b252b015-b488-4d5c-b16e-968c13e48a2c
 97d9238c-1a39-4873-b0bb-963ec2d788e6
 44c93f2b-dd66-4d15-81ef-de9394c76290
 0caedec7-1c7d-4e79-aba2-50f6916e643f
+b617ee1b-f8c8-4de9-b82b-e803ab93550d
diff --git a/tools/cellxgene_census_builder/pyproject.toml b/tools/cellxgene_census_builder/pyproject.toml
@@ -34,14 +34,14 @@ dependencies= [
     # recent cellxgene-census _readers_ are able to read the results of a Census build (writer).
     # The compatibility matrix is defined here:
     #    https://github.com/TileDB-Inc/TileDB/blob/dev/format_spec/FORMAT_SPEC.md
-    "tiledbsoma==1.9.3",
-    "cellxgene-census==1.12.0",
+    "tiledbsoma==1.11.4",
+    "cellxgene-census==1.15.0",
     "cellxgene-ontology-guide==1.0.0",
     "scipy==1.12.0",
     "fsspec[http]==2024.3.1",
     "s3fs==2024.3.1",
     "requests==2.32.0",
-    "aiohttp==3.9.3",
+    "aiohttp==3.10.2",
     "Cython", # required by owlready2
     "wheel",  # required by owlready2
     "owlready2==0.44",