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[python] Fix wrong parameters in ExperimentDataPipe #1178

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Jun 5, 2024
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[python] Fix wrong parameters in ExperimentDataPipe #1178

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8 changes: 4 additions & 4 deletions api/python/cellxgene_census/src/cellxgene_census/experimental/ml/pytorch.py
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Original file line number Diff line number Diff line change
Expand Up @@ -382,8 +382,8 @@ class ExperimentDataPipe(pipes.IterDataPipe[Dataset[ObsAndXDatum]]): # type: ig
def __init__(
self,
experiment: soma.Experiment,
measurement_name: str = "raw",
X_name: str = "X",
measurement_name: str = "RNA",
X_name: str = "raw",
obs_query: Optional[soma.AxisQuery] = None,
var_query: Optional[soma.AxisQuery] = None,
obs_column_names: Sequence[str] = (),
Expand All @@ -400,9 +400,9 @@ def __init__(
experiment:
The :class:`tiledbsoma.Experiment` from which to read data.
measurement_name:
The name of the :class:`tiledbsoma.Measurement` to read. Defaults to ``"raw"``.
The name of the :class:`tiledbsoma.Measurement` to read. Defaults to ``"RNA"``.
X_name:
The name of the X layer to read. Defaults to ``"X"``.
The name of the X layer to read. Defaults to ``"raw"``.
obs_query:
The query used to filter along the ``obs`` axis. If not specified, all ``obs`` and ``X`` data will
be returned, which can be very large.
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