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Pull requests: dnanexus/dx-toolkit

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Pull requests list

DEVEX-2461 Noble in NF pipelines by default
#1435 opened Feb 6, 2025 by mhrvol Loading…
1
DEVEX-2494 [security] [dx-toolkit] Upgrade httpclient dependency
#1434 opened Feb 5, 2025 by r-i-v-a Loading…
DEVEX-2493 [security] [dx-toolkit] Upgrade guava dependency
#1433 opened Feb 5, 2025 by r-i-v-a Loading…
DEVEX-2492 [security] [dx-toolkit] Upgrade jackson-core,databind dependencies
#1432 opened Feb 5, 2025 by r-i-v-a Loading…
DEVEX-2491 [security] [dx-toolkit] Upgrade commons-io dependency
#1431 opened Feb 5, 2025 by r-i-v-a Loading…
[DEVEX-2412] DXFile.read not respecting provided project context
#1430 opened Feb 5, 2025 by jsitarova-dnanexus Loading…
@wormsik @r-i-v-a @kpjensen
2
build and publish wheel
#1429 opened Jan 30, 2025 by dimbleby Loading…
Bump pip from 23.3.1 to 25.0 in /src/python dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1426 opened Jan 27, 2025 by dependabot bot Loading…
Bump xattr from 0.10.1 to 1.1.4 in /src/python dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1424 opened Jan 13, 2025 by dependabot bot Loading…
[APPS-2933] Test nextflow nf-core pipelines on Ubuntu 24.04 AEE
#1413 opened Oct 29, 2024 by jsitarova-dnanexus • Draft
DEVEX-2418 bug python Pull requests that update Python code
#1409 opened Oct 18, 2024 by vkuban-dx Loading…
5
TIP-3821 Update jackson libraries to work well with Spark 3.5.2
#1407 opened Oct 17, 2024 by sushanthdn Loading…
Move __future__ imports to beginning of files
#1377 opened Jun 4, 2024 by giang-nghg Loading…
Bump parameterized from 0.8.1 to 0.9.0 in /src/python dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1302 opened Dec 18, 2023 by dependabot bot Loading…
Bump pexpect from 4.6 to 4.9.0 in /src/python dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1300 opened Dec 18, 2023 by dependabot bot Loading…
Bump mock from 2.0.0 to 5.1.0 in /src/python dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1282 opened Nov 27, 2023 by dependabot bot Loading…
PTFM-36293 Fix potentially missing jobs in dx find --tree
#1150 opened Aug 21, 2023 by wormsik Loading…
Bump requests from 2.20.0 to 2.31.0 in /build dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1049 opened May 22, 2023 by dependabot bot Loading…
DEVEX-1916 Build UA on 22.04
#1012 opened Apr 13, 2023 by billagee • Draft
APPS-1673 improve nextflow file staging
#950 opened Mar 1, 2023 by YuxinShi0423 • Draft
[Snyk] Upgrade commons-codec:commons-codec from 1.10 to 1.15
#937 opened Feb 16, 2023 by keithmccartney-dna Loading…
[Snyk] Upgrade commons-io:commons-io from 2.5 to 2.11.0
#936 opened Feb 16, 2023 by keithmccartney-dna Loading…
[Snyk] Upgrade org.apache.httpcomponents:httpclient from 4.5.3 to 4.5.14
#935 opened Feb 16, 2023 by snyk-bot Loading…
[Snyk] Upgrade com.fasterxml.jackson.core:jackson-core from 2.9.10 to 2.14.1
#934 opened Feb 16, 2023 by snyk-bot Loading…
[Snyk] Upgrade com.fasterxml.jackson.core:jackson-databind from 2.9.10.8 to 2.14.1
#933 opened Feb 16, 2023 by snyk-bot Loading…
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