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| ref-names: $Format:%D$ | ||
| ref-names: $Format:%D$ |
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| # Interpret Jupyter notebooks as Python | ||
| *.ipynb linguist-language=Python | ||
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| # For automatic versioning via setuptools_scm_git_archive | ||
| .git_archival.txt export-subst | ||
| # Interpret Jupyter notebooks as Python | ||
| *.ipynb linguist-language=Python | ||
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| # For automatic versioning via setuptools_scm_git_archive | ||
| .git_archival.txt export-subst |
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| Original file line number | Diff line number | Diff line change |
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| @@ -1,23 +1,23 @@ | ||
| on: [push] | ||
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| jobs: | ||
| paper: | ||
| runs-on: ubuntu-latest | ||
| name: Paper Draft | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v3 | ||
| - name: Build draft PDF | ||
| uses: openjournals/openjournals-draft-action@master | ||
| with: | ||
| journal: joss | ||
| # This should be the path to the paper within your repo. | ||
| paper-path: docs/JOSS/paper.md | ||
| - name: Upload | ||
| uses: actions/upload-artifact@v1 | ||
| with: | ||
| name: paper | ||
| # This is the output path where Pandoc will write the compiled | ||
| # PDF. Note, this should be the same directory as the input | ||
| # paper.md | ||
| on: [push] | ||
|
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||
| jobs: | ||
| paper: | ||
| runs-on: ubuntu-latest | ||
| name: Paper Draft | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v3 | ||
| - name: Build draft PDF | ||
| uses: openjournals/openjournals-draft-action@master | ||
| with: | ||
| journal: joss | ||
| # This should be the path to the paper within your repo. | ||
| paper-path: docs/JOSS/paper.md | ||
| - name: Upload | ||
| uses: actions/upload-artifact@v1 | ||
| with: | ||
| name: paper | ||
| # This is the output path where Pandoc will write the compiled | ||
| # PDF. Note, this should be the same directory as the input | ||
| # paper.md | ||
| path: docs/JOSS/paper.pdf |
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| name: Release | ||
| on: | ||
| release: | ||
| types: | ||
| - published | ||
|
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| jobs: | ||
| release: | ||
| name: Deploy release to PyPI | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout source | ||
| uses: actions/checkout@v2 | ||
|
|
||
| - name: Set up Python | ||
| uses: actions/setup-python@v2 | ||
| with: | ||
| python-version: 3.10.12 | ||
|
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| - name: Install dependencies | ||
| run: python -m pip install wheel twine | ||
|
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| - name: Build package | ||
| run: python -m build | ||
|
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| - name: Upload package | ||
| uses: pypa/gh-action-pypi-publish@master | ||
| with: | ||
| user: __token__ | ||
| password: ${{ secrets.PYPI_TOKEN }} | ||
| name: Release | ||
| on: | ||
| release: | ||
| types: | ||
| - published | ||
|
|
||
| jobs: | ||
| release: | ||
| name: Deploy release to PyPI | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout source | ||
| uses: actions/checkout@v2 | ||
|
|
||
| - name: Set up Python | ||
| uses: actions/setup-python@v2 | ||
| with: | ||
| python-version: 3.10.12 | ||
|
|
||
| - name: Install dependencies | ||
| run: python -m pip install wheel twine | ||
|
|
||
| - name: Build package | ||
| run: python -m build | ||
|
|
||
| - name: Upload package | ||
| uses: pypa/gh-action-pypi-publish@master | ||
| with: | ||
| user: __token__ | ||
| password: ${{ secrets.PYPI_TOKEN }} |
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| name: Tests | ||
|
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| on: [push, pull_request] | ||
|
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| jobs: | ||
| Linting: | ||
| runs-on: ubuntu-latest | ||
|
|
||
| steps: | ||
| - uses: actions/checkout@v1 | ||
| - name: Set up Python 3.10.12 | ||
| uses: actions/setup-python@v3 | ||
| with: | ||
| python-version: 3.10.12 | ||
| - name: Linting | ||
| run: | | ||
| pip install pre-commit | ||
| pre-commit run --all-files | ||
| Linux: | ||
| needs: Linting | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| max-parallel: 8 | ||
| matrix: | ||
| python-version: [3.10.12] | ||
|
|
||
| steps: | ||
| - uses: actions/checkout@v1 | ||
| - name: Set up Python ${{ matrix.python-version }} | ||
| uses: actions/setup-python@v1 | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| - name: Install dependencies | ||
| run: | | ||
| pip install -r requirements-dev.txt | ||
| - name: Test with pytest | ||
| run: | | ||
| py.test test | ||
| - name: Generate coverage report | ||
| run: | | ||
| pip install pytest | ||
| pip install pytest-cov | ||
| pytest --cov=./ --cov-report=xml | ||
| - name: Upload coverage reports to Codecov | ||
| uses: codecov/codecov-action@v3 | ||
| - uses: actions/cache@v1 | ||
| with: | ||
| path: ~/.cache/pip | ||
| key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements-dev.txt') }} | ||
| restore-keys: | | ||
| ${{ runner.os }}-pip- | ||
| name: Tests | ||
|
|
||
| on: [push, pull_request] | ||
|
|
||
| jobs: | ||
| Linting: | ||
| runs-on: ubuntu-latest | ||
|
|
||
| steps: | ||
| - uses: actions/checkout@v1 | ||
| - name: Set up Python 3.10.12 | ||
| uses: actions/setup-python@v3 | ||
| with: | ||
| python-version: 3.10.12 | ||
| - name: Linting | ||
| run: | | ||
| pip install pre-commit | ||
| pre-commit run --all-files | ||
| Linux: | ||
| needs: Linting | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| max-parallel: 8 | ||
| matrix: | ||
| python-version: [3.10.12] | ||
|
|
||
| steps: | ||
| - uses: actions/checkout@v1 | ||
| - name: Set up Python ${{ matrix.python-version }} | ||
| uses: actions/setup-python@v1 | ||
| with: | ||
| python-version: ${{ matrix.python-version }} | ||
| - name: Install dependencies | ||
| run: | | ||
| pip install -r requirements-dev.txt | ||
| - name: Test with pytest | ||
| run: | | ||
| py.test test | ||
| - name: Generate coverage report | ||
| run: | | ||
| pip install pytest | ||
| pip install pytest-cov | ||
| pytest --cov=./ --cov-report=xml | ||
| - name: Upload coverage reports to Codecov | ||
| uses: codecov/codecov-action@v3 | ||
| - uses: actions/cache@v1 | ||
| with: | ||
| path: ~/.cache/pip | ||
| key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements-dev.txt') }} | ||
| restore-keys: | | ||
| ${{ runner.os }}-pip- |
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| Original file line number | Diff line number | Diff line change |
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| build | ||
| dist | ||
| *.egg-info | ||
| # automatically generated by setuptools-scm | ||
| pysindy/version.py | ||
| # sphinx gallery files | ||
| docs/examples | ||
| # virtual environment | ||
| venv | ||
|
|
||
| # eggs | ||
| .eggs | ||
|
|
||
| dev | ||
|
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| **/*cache* | ||
|
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| .coverage | ||
| coverage.xml | ||
|
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| .idea | ||
|
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||
| docs/api | ||
| docs/_build | ||
|
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||
| .ipynb_checkpoints | ||
| */.ipynb_checkpoints/* | ||
| */lightning_logs/* | ||
| lightning_logs | ||
| .DS_Store | ||
| .vscode | ||
|
|
||
| *.pyc | ||
|
|
||
| *.sublime* | ||
|
|
||
| Pipfile | ||
| Pipfile.lock | ||
| /htmlcov/ | ||
| build | ||
| dist | ||
| *.egg-info | ||
| # automatically generated by setuptools-scm | ||
| pysindy/version.py | ||
| # sphinx gallery files | ||
| docs/examples | ||
| # virtual environment | ||
| venv | ||
|
|
||
| # eggs | ||
| .eggs | ||
|
|
||
| dev | ||
|
|
||
| **/*cache* | ||
|
|
||
| .coverage | ||
| coverage.xml | ||
|
|
||
| .idea | ||
|
|
||
| docs/api | ||
| docs/_build | ||
|
|
||
| .ipynb_checkpoints | ||
| */.ipynb_checkpoints/* | ||
| */lightning_logs/* | ||
| lightning_logs | ||
| .DS_Store | ||
| .vscode | ||
|
|
||
| *.pyc | ||
|
|
||
| *.sublime* | ||
|
|
||
| Pipfile | ||
| Pipfile.lock | ||
| /htmlcov/ |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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| # Settings for pre-commit | ||
| fail_fast: false | ||
| repos: | ||
| - repo: https://github.com/pre-commit/pre-commit-hooks | ||
| rev: v4.3.0 | ||
| hooks: | ||
| - id: check-added-large-files | ||
| args: ["--maxkb=102400"] | ||
| - id: check-merge-conflict | ||
| - id: trailing-whitespace | ||
| - id: end-of-file-fixer | ||
| - repo: https://github.com/asottile/reorder_python_imports | ||
| rev: v3.9.0 | ||
| hooks: | ||
| - id: reorder-python-imports | ||
| exclude: ^(pre_commit/resources/|testing/resources/python3_hooks_repo/) | ||
| args: [--py37-plus, --add-import, 'from __future__ import annotations'] | ||
| - repo: https://github.com/ambv/black | ||
| rev: 22.8.0 | ||
| hooks: | ||
| - id: black | ||
| - repo: https://github.com/PyCQA/flake8 | ||
| rev: 5.0.4 | ||
| hooks: | ||
| - id: flake8 | ||
| args: ["--config=setup.cfg"] | ||
| # Settings for pre-commit | ||
| fail_fast: false | ||
| repos: | ||
| - repo: https://github.com/pre-commit/pre-commit-hooks | ||
| rev: v4.3.0 | ||
| hooks: | ||
| - id: check-added-large-files | ||
| args: ["--maxkb=102400"] | ||
| - id: check-merge-conflict | ||
| - id: trailing-whitespace | ||
| - id: end-of-file-fixer | ||
| - repo: https://github.com/asottile/reorder_python_imports | ||
| rev: v3.9.0 | ||
| hooks: | ||
| - id: reorder-python-imports | ||
| exclude: ^(pre_commit/resources/|testing/resources/python3_hooks_repo/) | ||
| args: [--py37-plus, --add-import, 'from __future__ import annotations'] | ||
| - repo: https://github.com/ambv/black | ||
| rev: 22.8.0 | ||
| hooks: | ||
| - id: black | ||
| - repo: https://github.com/PyCQA/flake8 | ||
| rev: 5.0.4 | ||
| hooks: | ||
| - id: flake8 | ||
| args: ["--config=setup.cfg"] |
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