Updated slimming workflow

enanomapper · Oct 8, 2024 · b0323de · b0323de
1 parent 9877394
commit b0323de
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diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
@@ -181,28 +181,6 @@ jobs:
       if: always()
       run: bash scripts/src/build-workflow/slim.sh msio
 
-  # apply props bao
-    - name: Apply props bao
-      if: always()
-      run: bash scripts/src/build-workflow/props.sh bao
-
-  # apply props npo
-    - name: Apply props npo
-      if: always()
-      run: bash scripts/src/build-workflow/props.sh npo
-
-  # apply props sio
-    - name: Apply props sio
-      if: always()
-      run: bash scripts/src/build-workflow/props.sh sio
-
-    - name: Apply props cheminf
-      if: always()
-      run: bash scripts/src/build-workflow/props.sh cheminf
-
-    - name: Apply props ro
-      if: always()
-      run: bash scripts/src/build-workflow/props.sh ro
   # Commit and push
     - name: Commit OWL files
       run: |

diff --git a/enanomapper-dev.owl b/enanomapper-dev.owl
@@ -1,81 +1,111 @@
 <?xml version="1.0"?>
 <rdf:RDF xmlns="http://www.enanomapper.net/ontologies/enanomapper.owl#"
      xml:base="http://www.enanomapper.net/ontologies/enanomapper.owl"
-     xmlns:entity_attribute3="http://purl.obolibrary.org/obo/envo-p/patterns/entity_attribute/"
-     xmlns:owl="http://www.w3.org/2002/07/owl#"
-     xmlns:obo1="http://purl.obolibrary.org/obo/"
+     xmlns:dc="http://purl.org/dc/elements/1.1/"
+     xmlns:uo="http://purl.obolibrary.org/obo/uo#"
+     xmlns:bao="http://www.bioassayontology.org/bao/#"
+     xmlns:efo="http://www.ebi.ac.uk/efo/"
      xmlns:foo="http://geneontology.org/foo/"
+     xmlns:npo="http://purl.bioontology.org/ontology/npo#"
+     xmlns:obo="http://purl.obolibrary.org/obo#"
+     xmlns:owl="http://www.w3.org/2002/07/owl#"
+     xmlns:pav="http://purl.org/pav/"
+     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+     xmlns:xml="http://www.w3.org/XML/1998/namespace"
      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
-     xmlns:skos="http://www.w3.org/2004/02/skos/core#"
-     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
-     xmlns:envo="http://purl.obolibrary.org/obo/envo#"
-     xmlns:cito="http://purl.org/spar/cito/"
-     xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#"
-     xmlns:core4="http://purl.obolibrary.org/obo/core#"
      xmlns:xsp="http://www.owl-ontologies.com/2005/08/07/xsp.owl#"
-     xmlns:Thesaurus="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#"
-     xmlns:terms="http://purl.org/dc/terms/"
-     xmlns:xml="http://www.w3.org/XML/1998/namespace"
+     xmlns:bibo="http://purl.org/ontology/bibo/"
+     xmlns:chmo="http://purl.obolibrary.org/obo/chmo#"
+     xmlns:cito="http://purl.org/spar/cito/"
+     xmlns:core="http://purl.obolibrary.org/obo/uberon/core#"
+     xmlns:envo="http://purl.obolibrary.org/obo/envo#"
+     xmlns:foaf="http://xmlns.com/foaf/0.1/"
+     xmlns:obo1="http://purl.obolibrary.org/obo/"
+     xmlns:onto="http://purl.enanomapper.net/onto/"
      xmlns:pato="http://purl.obolibrary.org/obo/pato#"
-     xmlns:cheminf2="http://www.semanticweb.org/ontologies/cheminf.owl#"
-     xmlns:uo="http://purl.obolibrary.org/obo/uo#"
+     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+     xmlns:skos="http://www.w3.org/2004/02/skos/core#"
      xmlns:vann="http://purl.org/vocab/vann/"
-     xmlns:foaf="http://xmlns.com/foaf/0.1/"
-     xmlns:cheminf-core="http://semanticscience.org/ontology/cheminf-core.owl#"
+     xmlns:ccont="http://livercancer.imbi.uni-heidelberg.de/ccont#"
+     xmlns:chebi="http://purl.obolibrary.org/obo/chebi/"
+     xmlns:core4="http://purl.obolibrary.org/obo/core#"
+     xmlns:sssom="https://w3id.org/sssom/"
+     xmlns:terms="http://purl.org/dc/terms/"
+     xmlns:schema="http://schema.org/"
      xmlns:uberon="http://purl.obolibrary.org/obo/uberon#"
-     xmlns:pav="http://purl.org/pav/"
+     xmlns:cheminf="http://semanticscience.org/ontology/cheminf.owl#"
+     xmlns:npo-ext="http://purl.enanomapper.net/onto/internal/npo-ext.owl/"
+     xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
+     xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
+     xmlns:cheminf2="http://www.semanticweb.org/ontologies/cheminf.owl#"
+     xmlns:npo-ext1="http://purl.enanomapper.net/onto/internal/npo-ext.owl#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
-     xmlns:resource="http://semanticscience.org/resource/"
      xmlns:patterns="http://www.co-ode.org/patterns#"
-     xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
-     xmlns:chmo="http://purl.obolibrary.org/obo/chmo#"
-     xmlns:npo="http://purl.bioontology.org/ontology/npo#"
-     xmlns:efo="http://www.ebi.ac.uk/efo/"
-     xmlns:entity_attribute="http://purl.obolibrary.org/obo/oba/patterns/entity_attribute/"
-     xmlns:core="http://purl.obolibrary.org/obo/uberon/core#"
-     xmlns:ccont="http://livercancer.imbi.uni-heidelberg.de/ccont#"
-     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
-     xmlns:cheminf="http://semanticscience.org/ontology/cheminf.owl#"
+     xmlns:resource="http://semanticscience.org/resource/"
+     xmlns:Thesaurus="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#"
+     xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#"
+     xmlns:dcmi-terms="https://www.dublincore.org/specifications/dublin-core/dcmi-terms/"
+     xmlns:cheminf-core="http://semanticscience.org/ontology/cheminf-core.owl#"
      xmlns:entity_quality="http://purl.obolibrary.org/obo/oba/patterns/entity_quality/"
-     xmlns:bibo="http://purl.org/ontology/bibo/"
-     xmlns:obo="http://purl.obolibrary.org/obo#"
-     xmlns:dc="http://purl.org/dc/elements/1.1/"
-     xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#">
+     xmlns:entity_attribute="http://purl.obolibrary.org/obo/oba/patterns/entity_attribute/"
+     xmlns:entity_attribute3="http://purl.obolibrary.org/obo/envo-p/patterns/entity_attribute/">
     <owl:Ontology rdf:about="https://raw.githubusercontent.com/enanomapper/ontologies/migrate-robot/enanomapper.owl">
+        <owl:imports rdf:resource="https://raw.githubusercontent.com/enanomapper/ontologies/migrate-robot/enanomapper-auto-dev.owl"/>
         <owl:imports rdf:resource="https://raw.githubusercontent.com/enanomapper/ontologies/migrate-robot/internal-dev/ontologies/assays_methods.owl"/>
         <owl:imports rdf:resource="https://raw.githubusercontent.com/enanomapper/ontologies/migrate-robot/internal-dev/ontologies/biological_entities.owl"/>
         <owl:imports rdf:resource="https://raw.githubusercontent.com/enanomapper/ontologies/migrate-robot/internal-dev/ontologies/chemicals_materials.owl"/>
-        <owl:imports rdf:resource="https://raw.githubusercontent.com/enanomapper/ontologies/migrate-robot/internal-dev/ontologies/qualities_dispositions.owl"/>
-        <owl:imports rdf:resource="https://raw.githubusercontent.com/enanomapper/ontologies/migrate-robot/internal-dev/ontologies/units.owl"/>
-        <owl:imports rdf:resource="https://raw.githubusercontent.com/enanomapper/ontologies/migrate-robot/internal-dev/ontologies/endpoints.owl"/>
-        <owl:imports rdf:resource="https://raw.githubusercontent.com/enanomapper/ontologies/migrate-robot/internal-dev/ontologies/echa-endpoints.owl"/>
-        <owl:imports rdf:resource="https://raw.githubusercontent.com/enanomapper/ontologies/migrate-robot/internal-dev/ontologies/wikidata.owl"/>
-        <owl:imports rdf:resource="https://raw.githubusercontent.com/enanomapper/ontologies/migrate-robot/internal-dev/ontologies/nmlco.owl"/> 
-        <owl:imports rdf:resource="https://raw.githubusercontent.com/enanomapper/ontologies/migrate-robot/enanomapper-auto-dev.owl"/>
         <owl:imports rdf:resource="https://raw.githubusercontent.com/enanomapper/ontologies/migrate-robot/internal-dev/ontologies/descriptors.owl"/>
+        <owl:imports rdf:resource="https://raw.githubusercontent.com/enanomapper/ontologies/migrate-robot/internal-dev/ontologies/echa-endpoints.owl"/>
+        <owl:imports rdf:resource="https://raw.githubusercontent.com/enanomapper/ontologies/migrate-robot/internal-dev/ontologies/endpoints.owl"/>
         <owl:imports rdf:resource="https://raw.githubusercontent.com/enanomapper/ontologies/migrate-robot/internal-dev/ontologies/information_content_entity.owl"/>
         <owl:imports rdf:resource="https://raw.githubusercontent.com/enanomapper/ontologies/migrate-robot/internal-dev/ontologies/instrument.owl"/>
-        <owl:versionInfo>11.0-SNAPSHOT</owl:versionInfo>
-        <dc:contributor>The eNanoMapper Consortium</dc:contributor>
-        <dc:contributor>The NanoCommons Consortium</dc:contributor>
-        <dc:contributor>The RiskGONE Consortium</dc:contributor>
-        <dc:contributor>The ACEnano - Analytical and Characterisation Excellence in nanomaterial risk assessment: A tiered approach (Grant Agreement 720952) Consortium</dc:contributor>
-        <dc:contributor>NanoinformaTIX - Development and Implementation of a Sustainable Modelling Platform for NanoInformatics (Grant Agreement 814426) Consortium</dc:contributor>
-        <rdfs:comment>The eNanoMapper project (https://www.enanomapper.net/), NanoCommons project (https://www.nanocommons.eu/) and ACEnano project (http://acenano-project.eu/) are creating a pan-European computational infrastructure for toxicological data management for ENMs, based on semantic web standards and ontologies. This ontology is an application ontology targeting the full domain of nanomaterial safety assessment. It re-uses several other ontologies including the NPO, CHEMINF, ChEBI, and ENVO.</rdfs:comment>
-        <dc:contributor>Nina Jeliazkova</dc:contributor>
-        <dc:contributor>Janna Hastings</dc:contributor>
+        <owl:imports rdf:resource="https://raw.githubusercontent.com/enanomapper/ontologies/migrate-robot/internal-dev/ontologies/nmlco.owl"/>
+        <owl:imports rdf:resource="https://raw.githubusercontent.com/enanomapper/ontologies/migrate-robot/internal-dev/ontologies/qualities_dispositions.owl"/>
+        <owl:imports rdf:resource="https://raw.githubusercontent.com/enanomapper/ontologies/migrate-robot/internal-dev/ontologies/units.owl"/>
+        <owl:imports rdf:resource="https://raw.githubusercontent.com/enanomapper/ontologies/migrate-robot/internal-dev/ontologies/wikidata.owl"/>
+        <dc:contributor>Ali Ayadi</dc:contributor>
+        <dc:contributor>Denise Slenter</dc:contributor>
         <dc:contributor>Egon Willighagen</dc:contributor>
-        <dc:contributor>Jiakang Chang</dc:contributor>
-        <dc:license>CC-BY 3.0 https://creativecommons.org/licenses/by/3.0/</dc:license>
         <dc:contributor>Friederike Ehrhart</dc:contributor>
         <dc:contributor>Gareth Owen</dc:contributor>
-        <dc:contributor>Linda Rieswijk</dc:contributor>
-        <dc:contributor>Philip Doganis</dc:contributor>
         <dc:contributor>Haralambos Sarimveis</dc:contributor>
-        <dc:contributor>Oana Florean</dc:contributor>
-        <dc:contributor>Denise Slenter</dc:contributor>
-        <dc:contributor>Laurent Winckers</dc:contributor>
-        <dc:contributor>Ali Ayadi</dc:contributor>
+        <dc:contributor>Janna Hastings</dc:contributor>
         <dc:contributor>Javier Millan Acosta</dc:contributor>
+        <dc:contributor>Jiakang Chang</dc:contributor>
+        <dc:contributor>Laurent Winckers</dc:contributor>
+        <dc:contributor>Linda Rieswijk</dc:contributor>
+        <dc:contributor>NanoinformaTIX - Development and Implementation of a Sustainable Modelling Platform for NanoInformatics (Grant Agreement 814426) Consortium</dc:contributor>
+        <dc:contributor>Nina Jeliazkova</dc:contributor>
+        <dc:contributor>Oana Florean</dc:contributor>
+        <dc:contributor>Philip Doganis</dc:contributor>
+        <dc:contributor>The ACEnano - Analytical and Characterisation Excellence in nanomaterial risk assessment: A tiered approach (Grant Agreement 720952) Consortium</dc:contributor>
+        <dc:contributor>The NanoCommons Consortium</dc:contributor>
+        <dc:contributor>The RiskGONE Consortium</dc:contributor>
+        <dc:contributor>The eNanoMapper Consortium</dc:contributor>
+        <dc:license>CC-BY 3.0 https://creativecommons.org/licenses/by/3.0/</dc:license>
+        <rdfs:comment>The eNanoMapper project (https://www.enanomapper.net/), NanoCommons project (https://www.nanocommons.eu/) and ACEnano project (http://acenano-project.eu/) are creating a pan-European computational infrastructure for toxicological data management for ENMs, based on semantic web standards and ontologies. This ontology is an application ontology targeting the full domain of nanomaterial safety assessment. It re-uses several other ontologies including the NPO, CHEMINF, ChEBI, and ENVO.</rdfs:comment>
+        <owl:versionInfo>11.0-SNAPSHOT</owl:versionInfo>
     </owl:Ontology>
+
+
+
+    <!-- 
+    ///////////////////////////////////////////////////////////////////////////////////////
+    //
+    // Annotation properties
+    //
+    ///////////////////////////////////////////////////////////////////////////////////////
+     -->
+
+
+
+
+    <!-- http://purl.org/dc/elements/1.1/license -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/license"/>
 </rdf:RDF>
+
+
+
+<!-- Generated by the OWL API (version 4.5.29.2024-05-13T12:11:03Z) https://github.com/owlcs/owlapi -->
+
diff --git a/external-dev/aopo-ext.owl b/external-dev/aopo-ext.owl