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phosphoproteomic

Download zip of this repository. Then open index.html to view Jupyter Notebook of this work and bokeh visualisation

This code forms backend of a website feature where user can upload phosphoproteomic data, define threshold parameters and visualise the analysis of the data. The output is divided into three components: a total summary represented as a volcano plot of phosphorylation sites and the kinases known to phosphylate at the given modified residue, a filtered kinase only volcano plot and relative kinase activity table that can be downloaded.

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