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104 Open 173 Closed
104 Open 173 Closed
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Issues list

Metabolism of folate and pterines (R-HSA-196757)
#330 opened Nov 14, 2024 by ukemi
1 of 2 tasks
@ukemi @deustp01
@sjm41 @rozaru
1
Glucose 6 phosphate anomer in Pentose Phosphate Pathway (R-HSA-71336) Reactome2GO:curation
#329 opened Nov 12, 2024 by sjm41
@deustp01 @sjm41
Change ChEBI xref used for Fru(6)P (R-ALL-29512.5) in Glycolysis/Gluconeogeneis/Pentose Phosphate Pathway bug
#328 opened Nov 7, 2024 by sjm41
@deustp01
1
Query for Complexes without an active subunit in Reactome Reactome2GO:curation
#327 opened Nov 6, 2024 by vanaukenk
@dustine32 @ukemi
17
Extract and emit UniProt classes for proteins Reactome2GO:Software
#326 opened Nov 5, 2024 by dustine32
@dustine32
1
Discuss possible rules for using 'is small molecule activator/inhibitor' relations in the conversion
#325 opened Nov 4, 2024 by vanaukenk
1
Removing molecular events - merging successive reactions with the same enabler and GO MF term Reactome2GO:Software
#324 opened Nov 4, 2024 by vanaukenk
@dustine32
Include downstream reaction and process in imported process models Reactome2GO:Software
#323 opened Nov 4, 2024 by vanaukenk
@dustine32
Add Biological Process for upstream reactions using 'part of' relation Reactome2GO:Software
#322 opened Nov 4, 2024 by vanaukenk
@dustine32
The direction of transport in model R-HSA-6787639 is backwards
#319 opened Aug 14, 2024 by ukemi
@dustine32
1
Activity node for reaction should be a process if GO BP is curated at Reactome
#318 opened Jun 13, 2024 by dustine32
@dustine32
5
Experiment: Only include chemicals that are causally connected in a model. Reactome2GO:Software
#317 opened Mar 21, 2024 by ukemi
@dustine32
2
To discuss: how to handle Reactome and Yeast Pathways imported GO-CAMs wrt input/output data updates question
#314 opened Mar 13, 2024 by vanaukenk
@vanaukenk
3
Reactome: amino acid and PTM mismatches Reactome2GO:PRO alignment
#312 opened Feb 7, 2024 by nataled
@deustp01
GO-CAM reaction labels don't match the Reactome pathway browser
#311 opened Jan 25, 2024 by ukemi
@dustine32 @deustp01
R-HSA-163765 "ChREBP activates metabolic gene expression" cleanup Reactome2GO:curation Reactome2GO model organisms Reactome2GO mol event cleanup
#310 opened Dec 15, 2023 by deustp01
4 of 5 tasks
@deustp01
1
Sub-sequence termini revisions/review Reactome2GO:PRO alignment
#309 opened Dec 14, 2023 by nataled
@deustp01
4
Switch on intermediate small molecule instance sharing for Reactome
#308 opened Dec 6, 2023 by dustine32
@dustine32
9
Complexes & Sets - info needed for PRO Reactome2GO:PRO alignment
#306 opened Dec 6, 2023 by nataled
@deustp01
Signal/Transit peptides in Reactome (12 confirmed cases) Reactome2GO:PRO alignment
#304 opened Dec 6, 2023 by nataled
@deustp01
3
Representation of an unknown enabler in Reactome and GO-CAM
#303 opened Nov 30, 2023 by huaiyumi
6
Represent enzymatic complex enablers according to GO-CAM spec Reactome2GO:curation Reactome2GO:Software
#302 opened Oct 30, 2023 by thomaspd
12
Third step: Use Textpresso-like resource to identify papers that could provide evidence for statements that aren't supported by evidence from existing annotations.
#300 opened Oct 25, 2023 by ukemi
@vanaukenk @ukemi
1
Second step: Add existing evidence to imported pathways
#299 opened Oct 25, 2023 by ukemi
@vanaukenk @dustine32
@ukemi @deustp01
1
First step: Import Reactome Pathways for MOD species
#298 opened Oct 25, 2023 by ukemi
2 of 3 tasks
@vanaukenk @dustine32
@ukemi @deustp01
6
ProTip! Exclude everything labeled bug with -label:bug.