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Vep 101.0 v1 #6

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merged 4 commits into from
Feb 3, 2021
Merged

Vep 101.0 v1 #6

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985b930
updating vep version
chrisamiller Oct 6, 2020
ec3ff68
removing unneeded scripts
chrisamiller Oct 6, 2020
24e7e11
updating readme
chrisamiller Oct 6, 2020
1d4a5c1
removing unneeded files
chrisamiller Oct 6, 2020
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12 changes: 3 additions & 9 deletions Dockerfile
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Original file line number Diff line number Diff line change
@@ -1,8 +1,6 @@
FROM ensemblorg/ensembl-vep:release_95.3
MAINTAINER John Garza <[email protected]>

LABEL \
description="Vep helper image"
FROM ensemblorg/ensembl-vep:release_101.0
LABEL maintainer="John Garza <[email protected]>"
LABEL description="Vep helper image"

USER root

Expand Down Expand Up @@ -33,10 +31,6 @@ https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/95/SpliceRegion.pm
https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/95/dbNSFP.pm \
https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/95/dbNSFP_replacement_logic

COPY add_annotations_to_table_helper.py /usr/bin/add_annotations_to_table_helper.py
COPY docm_and_coding_indel_selection.pl /usr/bin/docm_and_coding_indel_selection.pl
COPY vcf_check.pl /usr/bin/vcf_check.pl
COPY intervals_to_bed.pl /usr/bin/intervals_to_bed.pl
COPY single_sample_docm_filter.pl /usr/bin/single_sample_docm_filter.pl

USER vep
2 changes: 1 addition & 1 deletion README.md
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@@ -1 +1 @@
This repo has moved to genome/docker-vep_helper-cwl
VEP plus accessory script for empty VCF handling
123 changes: 0 additions & 123 deletions add_annotations_to_table_helper.py
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81 changes: 0 additions & 81 deletions docm_and_coding_indel_selection.pl
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10 changes: 0 additions & 10 deletions intervals_to_bed.pl
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38 changes: 0 additions & 38 deletions single_sample_docm_filter.pl
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