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Robert J. Gifford edited this page Nov 21, 2024 · 1 revision

NCBI-HBV-GLUE

NCBI-HBV-GLUE is an extension to HBV-GLUE that incorporates sequences from NCBI GenBank.

GLUE is an open, integrated software toolkit for management and analysis of molecular sequence data. The HBV-GLUE project family aims to establish an open, community-maintained platform for comparative genomic analysis of HBV.

A web user interface to HBV-GLUE is hosted by the MRC-University of Glasgow Centre for Virus Research.

  • HBV-GLUE synchronises with GenBank every 24h.
  • New sequences are automatically genotyped and aligned.
  • Each clade has its own page where you can select sequences from that clade.

Overview & Installation

  1. Home
  2. Background
  3. Requirements
  4. Docker Installation
  5. Native Installation
  6. Usage Overview

HBV GLUE Core Project

  1. Project Settings
  2. Schema Extensions
  3. Project Data
  4. Genotyping Tools

GLUE User Guide

  1. Project Data Model
  2. Schema Extensions
  3. Modules
  4. Alignments
  5. Variations
  6. Scripting Layer
  7. Freemarker Templates

Command Reference

  1. Command Mode Reference
  2. Mode Non-Specific Commands
  3. Module Type Reference

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