Enhancements

.ghsci_version

@@ -1 +1 @@
-4.6.0
+4.7.0

.test-compose.yml

@@ -1,6 +1,6 @@
 services:
   ghsci:
-    image: globalhealthyliveablecities/global-indicators:v4.6.0
+    image: globalhealthyliveablecities/global-indicators:v4.7.0
     container_name: ghsci
     shm_size: 2g
     stdin_open: true # docker run -i

docker-compose.yml

@@ -1,6 +1,6 @@
 services:
   ghsci:
-    image: globalhealthyliveablecities/global-indicators:v4.6.0
+    image: globalhealthyliveablecities/global-indicators:v4.7.0
     container_name: ghsci
     shm_size: 2g
     stdin_open: true # docker run -i

docker/environment.yml

@@ -3,31 +3,26 @@ channels:
   - conda-forge
 dependencies:
   - python
-  - osmnx=1.9.3 # OpenStreetMap network retrieval and analysis
-  - geopandas=1.0.*
-  - pandas=2.1.*
-  - fpdf2=2.7.* # pdf templating
+  - osmnx=1.9.4 # OpenStreetMap network retrieval and analysis
+  - pandas=2.1.* # pandas > 2.2 requires transition to Apache Arrow postgreSQL driver
+  - fpdf2=2.8.* # pdf templating
   - sqlalchemy=1.4.* # SQL connectivity with PostgreSQL
-  - nicegui=1.4.29 # web app framework
-  - cryptography=42.0.*,>=42.0.4
-  - tornado=6.4.*,>=6.4.1
-  - fonttools=4.43.*
-  - jupyterlab=4.2.* # code notebooks / web interface
-  - pillow=10.*,>=10.3.0
-  - pip=24.*
-  - pyrosm=0.6.* # possible alternate OSM/network retrieval
-  - idna>=3.7
-  - tqdm=4.*, >=4.66.3
-  - openpyxl
-  - babel
-  - cartopy
+  - nicegui=2.9.1 # web app framework
+  - fonttools=4.55.*
+  - jupyterlab=4.3.* # code notebooks / web interface
+  - pip # python package installer
+  - tqdm=4.*, >=4.66.3 # progress bar
+  - openpyxl # Excel file reading
+  - babel # language localization
+  - cartopy # map plotting
   - contextily # basemaps and map styling
-  - ipywidgets
+  - ipywidgets # for jupyter lab progress bar
   - geoalchemy2 # Geometry datatype extension for SQL Alchemy
   - pandana # network analysis using Pandas
   - rasterio # raster data reading
   - pygeometa # metadata templating tools
   - psycopg2 # PostgreSQL connection
   - pyyaml # YAML parsing
-  - websockets
-  - zipp=3.19.*, >=3.19.1 # https://github.com/healthysustainablecities/global-indicators/security/dependabot/61
+  - yamllint # YAML linting
+  - urllib3>=2.2.3 # HTTP request handling (docker scout patch)
+  - certifi>=2023.7.22 # SSL certificate verification (docker scout patch)

docker/requirements.txt

@@ -1,204 +1,202 @@
 affine==2.4.0
 aiofiles==24.1.0
-aiohttp==3.9.5
-aiosignal==1.3.1
+aiohappyeyeballs==2.4.4
+aiohttp==3.11.11
+aiosignal==1.3.2
 annotated-types==0.7.0
 anyio==3.7.1
 argon2-cffi==23.1.0
 argon2-cffi-bindings==21.2.0
 arrow==1.3.0
-asttokens==2.4.1
+asttokens==3.0.0
 async-lru==2.0.4
-attrs==23.2.0
-Babel==2.14.0
+attrs==24.3.0
+babel==2.16.0
 beautifulsoup4==4.12.3
 bidict==0.23.1
-bleach==6.1.0
-branca==0.7.2
+bleach==6.2.0
+branca==0.8.1
 Brotli==1.1.0
 cached-property==1.5.2
-Cartopy==0.23.0
-certifi==2024.7.4
-cffi==1.16.0
-charset-normalizer==3.3.2
-click==8.1.7
+Cartopy==0.24.0
+certifi==2024.12.14
+cffi==1.17.1
+charset-normalizer==3.4.1
+click==8.1.8
 click-plugins==1.1.1
 cligj==0.7.2
 colorama==0.4.6
 comm==0.2.2
-contextily==1.6.0
-contourpy==1.2.1
-cryptography==42.0.8
+contextily==1.6.2
+contourpy==1.3.1
 cycler==0.12.1
-cykhash==2.0.1
-Cython==3.0.10
-dataclasses==0.8
-debugpy==1.8.2
+debugpy==1.8.11
 decorator==5.1.1
 defusedxml==0.7.1
 docutils==0.21.2
 entrypoints==0.4
-et-xmlfile==1.1.0
+et_xmlfile==2.0.0
 exceptiongroup==1.2.2
-executing==2.0.1
+executing==2.1.0
 fastapi==0.109.2
-fastjsonschema==2.20.0
-folium==0.17.0
-fonttools==4.43.1
-fpdf2==2.7.9
+fastjsonschema==2.21.1
+fiona==1.10.1
+folium==0.19.4
+fonttools==4.55.3
+fpdf2==2.8.2
 fqdn==1.5.1
-frozenlist==1.4.1
-GDAL==3.9.1
-GeoAlchemy2==0.15.2
+frozenlist==1.5.0
+GDAL==3.9.3
+GeoAlchemy2==0.16.0
 geographiclib==2.0
-geopandas==1.0.1
+geopandas==0.14.4
 geopy==2.4.1
-greenlet==3.0.3
+greenlet==3.1.1
 gtfs-lite==0.2.2
 h11==0.14.0
 h2==4.1.0
 hpack==4.0.0
-httpcore==1.0.5
-httpx==0.27.0
+httpcore==1.0.7
+httpx==0.28.1
 hyperframe==6.0.1
-idna==3.7
+idna==3.10
 ifaddr==0.2.0
-importlib_metadata==8.0.0
-importlib_resources==6.4.0
+importlib_metadata==8.5.0
+importlib_resources==6.5.2
 ipykernel==6.29.5
-ipython==8.26.0
-ipywidgets==8.1.3
+ipython==8.31.0
+ipywidgets==8.1.5
 isoduration==20.11.0
 itsdangerous==2.2.0
-jedi==0.19.1
-Jinja2==3.1.4
+jedi==0.19.2
+Jinja2==3.1.5
 joblib==1.4.2
-json5==0.9.25
+json5==0.10.0
 jsonpointer==3.0.0
 jsonschema==4.23.0
-jsonschema-specifications==2023.12.1
-jupyter_client==8.6.2
+jsonschema-specifications==2024.10.1
+jupyter_client==8.6.3
 jupyter_core==5.7.2
-jupyter-events==0.10.0
+jupyter-events==0.11.0
 jupyter-lsp==2.2.5
-jupyter_server==2.14.2
+jupyter_server==2.15.0
 jupyter_server_terminals==0.5.3
-jupyterlab==4.2.3
+jupyterlab==4.3.4
 jupyterlab_pygments==0.3.0
 jupyterlab_server==2.27.3
-jupyterlab_widgets==3.0.11
-kiwisolver==1.4.5
-lxml==5.2.2
-mapclassify==2.6.1
-markdown2==2.5.0
-MarkupSafe==2.1.5
-matplotlib==3.9.1
+jupyterlab_widgets==3.0.13
+kiwisolver==1.4.7
+lxml==5.3.0
+mapclassify==2.8.1
+markdown2==2.5.2
+MarkupSafe==3.0.2
+matplotlib==3.8.4
 matplotlib-inline==0.1.7
 mercantile==1.2.1
-mistune==3.0.2
-multidict==6.0.5
+mistune==3.1.0
+multidict==6.1.0
 munkres==1.1.4
-nbclient==0.10.0
-nbconvert==7.16.4
+nbclient==0.10.2
+nbconvert==7.16.5
 nbformat==5.10.4
 nest_asyncio==1.6.0
 networkx==3.3
-nicegui==1.4.28.dev0
+nicegui==2.9.0.dev0
 notebook_shim==0.2.4
-numexpr==2.10.0
+numexpr==2.10.2
 numpy==1.26.4
-openpyxl==3.1.4
-orjson==3.10.6
-osmnx==1.9.3
+openpyxl==3.1.5
+orjson==3.10.13
+osmnx==1.9.4
 overrides==7.7.0
-OWSLib==0.31.0
-packaging==24.1
+OWSLib==0.32.0
+packaging==24.2
 pandana==0.7
 pandas==2.1.4
 pandocfilters==1.5.0
 parso==0.8.4
+pathspec==0.12.1
 pexpect==4.9.0
 pickleshare==0.7.5
-pillow==10.4.0
-pip==24.0
+pillow==11.1.0
+pip==24.3.1
 pkgutil_resolve_name==1.3.10
-platformdirs==4.2.2
-prometheus_client==0.20.0
-prompt_toolkit==3.0.47
+platformdirs==4.3.6
+prometheus_client==0.21.1
+prompt_toolkit==3.0.48
+propcache==0.2.1
 pscript==0.7.7
-psutil==6.0.0
+psutil==6.1.1
 psycopg2==2.9.9
 ptyprocess==0.7.0
-pure-eval==0.2.2
+pure_eval==0.2.3
 py-cpuinfo==9.0.0
 pycparser==2.22
-pydantic==2.8.2
-pydantic_core==2.20.1
-pygeometa==0.15.3
-Pygments==2.18.0
-pyogrio==0.9.0
-pyparsing==3.1.2
-pyproj==3.6.1
-pyrobuf==0.9.3
-pyrosm==0.6.2
+pydantic==2.10.4
+pydantic_core==2.27.2
+pygeometa==0.16.1
+Pygments==2.19.1
+pyparsing==3.2.1
+pyproj==3.7.0
 pyshp==2.3.1
 PySocks==1.7.1
-python-dateutil==2.9.0
-python-engineio==4.9.1
+python-dateutil==2.9.0.post0
+python-engineio==4.11.2
 python-json-logger==2.0.7
-python-multipart==0.0.9
-python-rapidjson==1.18
-python-socketio==5.11.3
-pytz==2024.1
-PyYAML==6.0.1
-pyzmq==26.0.3
-rasterio==1.3.10
+python-multipart==0.0.20
+python-socketio==5.12.1
+pytz==2024.2
+PyYAML==6.0.2
+pyzmq==26.2.0
+rasterio==1.3.11
 referencing==0.35.1
 requests==2.32.3
-rfc3339-validator==0.1.4
+rfc3339_validator==0.1.4
 rfc3986-validator==0.1.1
-rpds-py==0.19.0
-scikit-learn==1.5.1
-scipy==1.14.0
+rpds-py==0.22.3
+Rtree==1.3.0
+scikit-learn==1.5.2
+scipy==1.13.1
 Send2Trash==1.8.3
-setuptools==71.0.1
-shapely==2.0.5
-simple-websocket==1.0.0
-six==1.16.0
+setuptools==75.6.0
+shapely==2.0.6
+simple-websocket==1.1.0
+six==1.17.0
 sniffio==1.3.1
 snuggs==1.4.7
 soupsieve==2.5
-SQLAlchemy==1.4.49
+SQLAlchemy==1.4.54
 src==0.0.0
-stack-data==0.6.2
+stack_data==0.6.3
 starlette==0.36.3
-tables==3.9.2
+tables==3.10.2
 terminado==0.18.1
 threadpoolctl==3.5.0
-tinycss2==1.3.0
-tomli==2.0.1
-tornado==6.4.1
-tqdm==4.66.4
+tinycss2==1.4.0
+tomli==2.2.1
+tornado==6.4.2
+tqdm==4.67.1
 traitlets==5.14.3
-types-python-dateutil==2.9.0.20240316
+types-python-dateutil==2.9.0.20241206
 typing_extensions==4.12.2
-typing-utils==0.1.0
-tzdata==2024.1
-uharfbuzz==0.39.3
+typing_utils==0.1.0
+tzdata==2024.2
+uharfbuzz==0.44.0
+unicodedata2==15.1.0
 uri-template==1.3.0
-urllib3==2.2.2
-uvicorn==0.30.1
+urllib3==2.3.0
+uvicorn==0.34.0
 vbuild==0.8.2
-watchfiles==0.22.0
+watchfiles==1.0.3
 wcwidth==0.2.13
-webcolors==24.6.0
+webcolors==24.11.1
 webencodings==0.5.1
 websocket-client==1.8.0
-websockets==12.0
-wheel==0.43.0
-widgetsnbextension==4.0.11
+wheel==0.45.1
+widgetsnbextension==4.0.13
 wsproto==1.2.0
-xyzservices==2024.6.0
-yarl==1.9.4
-zipp==3.19.2
+xyzservices==2024.9.0
+yamllint==1.35.1
+yarl==1.18.3
+zipp==3.21.0
 zstandard==0.23.0

process/example.ipynb

@@ -424,7 +424,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.12.4"
+   "version": "3.12.8"
   }
  },
  "nbformat": 4,