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Update README.md
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shakson-isaac authored Jul 27, 2023
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Expand Up @@ -76,7 +76,7 @@ Followed by SCENT algorithm:
```r
SCENT_obj <- SCENT_algorithm(object = SCENT_obj, celltype = "Tcell", ncores = 6, regr = 'poisson', bin = TRUE)
```
The user specifies a `celltype` (in this case “Tcell”) for association analysis (in meta.data slot in SCENT object), `ncores` for the number of cores for parallelized bootstrapping, `regr` for the regression type (Poisson ‘poisson’ or Negative Binomial ‘negbin’ regression), and `bin` for whether to binarize ATAC counts (TRUE for binarization or FALSE for not).
The user specifies a `celltype` (in this case “Tcell”) for association analysis (in `meta.data` slot in SCENT object), `ncores` for the number of cores for parallelized bootstrapping, `regr` for the regression type (Poisson ‘poisson’ or Negative Binomial ‘negbin’ regression), and `bin` for whether to binarize ATAC counts (TRUE for binarization or FALSE for not).

The output of the SCENT algorithm will be contained in the field:
```r
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