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Johannes lab

Plant Epigenomics

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  1. MethylStar MethylStar Public

    A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.

    Python 32 6

  2. AlphaBeta AlphaBeta Public

    Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

    R 10 2

  3. mutSOMA mutSOMA Public

    R 1

  4. Number-Sepration Number-Sepration Public

  5. Zhang-et-al-project Zhang-et-al-project Public

    R 1

  6. jDMRgrid jDMRgrid Public

    jDMRgrid: a heuristic DMR caller for WGBS data using grid approach

    R 1

Repositories

Showing 8 of 8 repositories
  • jDMRgrid Public

    jDMRgrid: a heuristic DMR caller for WGBS data using grid approach

    jlab-code/jDMRgrid’s past year of commit activity
    R 0 1 0 1 Updated Nov 13, 2024
  • GenomicLinks Public
    jlab-code/GenomicLinks’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 8, 2024
  • gbMine Public

    Automatic detection of gene body methylated genes in plant genomes

    jlab-code/gbMine’s past year of commit activity
    Python 0 0 0 0 Updated Feb 8, 2024
  • AlphaBeta Public

    Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

    jlab-code/AlphaBeta’s past year of commit activity
    R 10 GPL-3.0 2 1 1 Updated Jan 4, 2023
  • MethylStar Public

    A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.

    jlab-code/MethylStar’s past year of commit activity
    Python 32 GPL-3.0 6 5 0 Updated Sep 24, 2021
  • Zhang-et-al-project Public
    jlab-code/Zhang-et-al-project’s past year of commit activity
    R 0 1 0 0 Updated May 14, 2021
  • mutSOMA Public
    jlab-code/mutSOMA’s past year of commit activity
    R 1 0 0 0 Updated Jul 11, 2019
  • Number-Sepration Public
    jlab-code/Number-Sepration’s past year of commit activity
    0 GPL-2.0 0 0 0 Updated Jan 15, 2014

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