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4721b8e · Nov 7, 2024

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Source code for analysis of DetermaIO assay in NeoTRIP RNA-Seq data

This repository includes input data and R script to reproduce the analysis reported in Dugo et al, XXX, 2024.

Instructions

To run the analysis download the repository in your favourite folder. Change the inputPath variable at the beginning of the NeoTRIP_DetermaIO_analyses.R script with the path of your folder. Run the script in R/RStudio.

The following R libraries are required to run the script:

  • ggplot2
  • ggpubr
  • ggsci
  • gridExtra
  • grid
  • cowplot
  • vcd
  • egg
  • grDevices
  • rcartocolor
  • RColorBrewer
  • epiR
  • openxlsx

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