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PvSTATEM 0.1.0 #193

Merged
merged 13 commits into from
Oct 28, 2024
Merged

PvSTATEM 0.1.0 #193

merged 13 commits into from
Oct 28, 2024

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Fersoil
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@Fersoil Fersoil commented Oct 24, 2024

  • Remove extraneous column from RAU output
  • Limit the amount of data frame presented in the vignettes
  • Added notes field in the HTML report
  • Made nplr warnings more informative
  • Enhanced and unified file saving for generate_plate_report and process_plate
  • Reduced HTML report size and improved its structure
  • Added vignette for generate_plate_report function

ZetrextJG and others added 4 commits October 23, 2024 00:28
* Remove extraneous column from RAU output

* Limit the amount of dataframe presented in the vignettes
* Change warnings to message for handle_datetime

* Fix warnings with bottom asymptote for plots

* Manually handle values outside the asymptotes

* Add test covering the warning
* inital draft of notes

* implement additional notes in template

* implement in package code

* tests and multiline support

* improved docs and new test

* typos fix

* docs rerun
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codecov bot commented Oct 24, 2024

Codecov Report

Attention: Patch coverage is 99.10714% with 1 line in your changes missing coverage. Please review.

Project coverage is 88.06%. Comparing base (6ec2a1b) to head (5b22170).
Report is 13 commits behind head on main.

Files with missing lines Patch % Lines
R/helpers.R 96.15% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #193      +/-   ##
==========================================
+ Coverage   87.51%   88.06%   +0.54%     
==========================================
  Files          14       14              
  Lines        1650     1717      +67     
==========================================
+ Hits         1444     1512      +68     
+ Misses        206      205       -1     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@Fersoil Fersoil changed the title PvSTATEM 0.0.6 PvSTATEM 0.1.0 Oct 24, 2024
nizwant and others added 3 commits October 28, 2024 10:08
* remove warnings from report and decrease dpi of thumbnails -1.5MB

* reduce size by 50%

* add dependency and rerun docs

* reports vignettes init

* text without images yet

* improve vignettes but still with no photo

* clean report vignette

* upload pictures

* correctly add photos

* better handling of images and new notes photo

* fixing grammar
* adjusted  file saving options to the  style

* added a bit more description of the plate name

* added `normalised_data` dir to .gitignore

* helper function for validation the filepaths

* updated vignettes and docs

* updated the docs

* fixed minor errors

* adjusted tests

* tests for `validate_filepath_and_output_dir`

* raise the package version

* examples fix

* Update R/generate_report.R

Co-authored-by: Jakub Grzywaczewski <[email protected]>

* added proposed changes from both the reviews

* added proposed changes from both the reviews

Update R/generate_report.R

Co-authored-by: Jakub Grzywaczewski <[email protected]># This is a combination of 2 commits.

added proposed changes from both the reviews

Update R/generate_report.R

Co-authored-by: Jakub Grzywaczewski <[email protected]>

* `tmp_dir` -> `example_dir`; fixed some descriptions in vignettes

---------

Co-authored-by: Fersoil <Fersoil>
Co-authored-by: Jakub Grzywaczewski <[email protected]>
@Fersoil Fersoil marked this pull request as ready for review October 28, 2024 09:44
@Fersoil Fersoil merged commit 5b22170 into main Oct 28, 2024
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3 participants