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obsolete pyogenic autoinflammatory syndrome of childhood #7103

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Jan 26, 2024
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obsolete pyogenic autoinflammatory syndrome of childhood #7103

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5bebddd
obsolete pyogenic autoinflammatory syndrome of childhood
nicolevasilevsky Jan 5, 2024
8317f06
add exclusion reason
nicolevasilevsky Jan 12, 2024
de3aeb0
Merge branch 'master' into issue-6789
sabrinatoro Jan 25, 2024
f109921
removed comment
sabrinatoro Jan 26, 2024
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11 changes: 5 additions & 6 deletions src/ontology/mondo-edit.obo
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Expand Up @@ -524968,19 +524968,18 @@ is_a: MONDO:0015137 {source="https://orcid.org/0000-0001-5208-3432"} ! periodic

[Term]
id: MONDO:0957404
name: pyogenic autoinflammatory syndrome of childhood
comment: Reason of obsoletion: out of scope - MONDO:excludeHistoricalDisease. Term to consider: -none. This term's classification was reviewed in the context of the Strategic Refinement project (2023) and was determined to be excluded from the 'connective tissue disorder' (MONDO:0018153) ontology branch (https://orcid.org/0000-0002-1780-5230)
name: obsolete pyogenic autoinflammatory syndrome of childhood
comment: This term's classification was reviewed in the context of the Strategic Refinement project (2023) and was determined to be excluded from the 'connective tissue disorder' (MONDO:0018153) ontology branch (https://orcid.org/0000-0002-1780-5230)
subset: gard_rare {source="GARD:21459"}
subset: obsoletion_candidate
subset: orphanet_rare {source="Orphanet:324942"}
subset: rare
xref: GARD:21459 {source="Orphanet:324942"}
xref: Orphanet:324942 {source="MONDO:equivalentTo"}
is_a: MONDO:0019751 {source="https://orcid.org/0000-0001-7941-2961", source="https://orcid.org/0000-0002-5002-8648"} ! autoinflammatory syndrome
xref: Orphanet:324942 {source="MONDO:obsoleteEquivalent"}
property_value: IAO:0000231 OMO:0001000 {source="MONDO:excludeHistoricalDisease"}
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Is this the same reason as used in the strategic refinement work? I think is should be: property_value: IAO:0000231 OMO:0001000 {source="MONDO:excludeGrouping"}

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this was not a grouping class, so it is not appropriate to add that exclusion reason.

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@nicolevasilevsky nicolevasilevsky Jan 12, 2024 •
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@twhetzel could you please review again and approve and merge?

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Oh, even though the Orphanet page says it is a grouping term: https://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=EN&Expert=324942?

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got it! I'll add the exclusion reason

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ready for review

property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/6742" xsd:anyURI
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/6789" xsd:anyURI
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/6878" xsd:anyURI
property_value: IAO:0006012 "2024-02-02" xsd:string
is_obsolete: true

[Term]
id: MONDO:0957405
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