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Properly handle TSVs with csvtk #58

Merged
merged 2 commits into from
Jan 13, 2025
Merged

Properly handle TSVs with csvtk #58

merged 2 commits into from
Jan 13, 2025

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DOH-LMT2303
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@DOH-LMT2303 DOH-LMT2303 commented Jan 13, 2025

Description

Edit the ingest workflow to properly handle TSVs with csvtk. This follows guidance provided in this commit in the pathogen-repo-guide

Test

Ran ingest workflow with no errors.

@DOH-LMT2303 DOH-LMT2303 linked an issue Jan 13, 2025 that may be closed by this pull request
@DOH-LMT2303 DOH-LMT2303 marked this pull request as ready for review January 13, 2025 22:30
@DOH-LMT2303 DOH-LMT2303 requested a review from j23414 January 13, 2025 22:37
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Looks great, thanks! https://github.com/nextstrain/WNV/actions/runs/12757515872

Feel free to merge

@DOH-LMT2303 DOH-LMT2303 merged commit 325a677 into main Jan 13, 2025
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@DOH-LMT2303 DOH-LMT2303 deleted the handle-csv-like-tsvs branch January 13, 2025 23:16
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Properly handle CSV-like TSVs
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