Update overview MLR analysis

This keep window back to spring 2022 with the starting point of clade 21L (lineage BA.1)
nextstrain · Dec 4, 2023 · 6907c52 · 6907c52
1 parent aa3d8a7
commit 6907c52
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Showing 2 changed files with 6 additions and 6 deletions.
diff --git a/config/config.yaml b/config/config.yaml
@@ -13,20 +13,20 @@ prepare_data:
   gisaid:
     nextstrain_clades:
       global:
-        included_days: 500
-        location_min_seq: 12000
-        location_min_seq_days: 500
+        included_days: 670
+        location_min_seq: 20000
+        location_min_seq_days: 670
         excluded_locations: "defaults/global_excluded_locations.txt"
         prune_seq_days: 12
         clade_min_seq: 5000
-        clade_min_seq_days: 500
+        clade_min_seq_days: 670
 
 # Params for the model run scripts
 models:
   gisaid:
     nextstrain_clades:
       global:
-        pivot: "'21K (Omicron)'"
+        pivot: "21K"
 
 # Model configs
 mlr_config: "config/mlr-config.yaml"

diff --git a/config/mlr-config.yaml b/config/mlr-config.yaml
@@ -13,7 +13,7 @@ settings:
 
 model:
   generation_time: 4.8
-  pivot: "23A (Omicron)"
+  pivot: "23A"
   hierarchical: false
 
 inference: