version nextclade binary for transition, i.e. nextclade -> nextclade2

nextstrain · Dec 14, 2023 · 8cf76ae · 8cf76ae
1 parent 024910d
commit 8cf76ae
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/snakemake_rules/main_workflow.smk b/workflow/snakemake_rules/main_workflow.smk
@@ -499,7 +499,7 @@ rule build_align:
             --sequences {input.sequences} \
             --strip-prefixes {params.strain_prefixes:q} \
             --output /dev/stdout 2> {params.sanitize_log} \
-            | nextclade run \
+            | nextclade2 run \
             --jobs {threads} \
             --input-dataset {input.nextclade_dataset} \
             --output-tsv {output.nextclade_qc} \