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@outlierbio Outlier Bio

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    12 repositories

    • ob-notebooks

      Public
      Computational notebook templates for common data analyses
      Jupyter Notebook
      •0•1•0•0•Updated May 19, 2019May 19, 2019

    • ob-genomics

      Public
      Genomics ETL, database, analysis, and visualization platform
      Python
      •
      Other
      •0•2•0•0•Updated Mar 15, 2019Mar 15, 2019

    • ob-pipelines

      Public
      Luigi pipelines and Dockerized apps for bioinformatics and data science
      HTML
      •
      Apache License 2.0
      •7•11•0•1•Updated Oct 2, 2018Oct 2, 2018

    • ob-docker

      Public
      Docker images for bioinformatics notebook and app environments
      R
      •0•1•0•0•Updated Jun 30, 2018Jun 30, 2018

    • ob-project-template

      Public
      Outlier Bio analysis project template
      Jupyter Notebook
      •15•54•0•0•Updated Jan 29, 2018Jan 29, 2018

    • luigi

      Public
      Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.
      Python
      •
      Apache License 2.0
      •2.4k•0•0•0•Updated Jan 2, 2018Jan 2, 2018

    • s3wrap

      Public
      Use S3 URLs as arguments for any command-line tool
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 23, 2017Dec 23, 2017

    • hail

      Public
      Scalable genetic data analysis.
      Scala
      •
      MIT License
      •246•0•0•0•Updated Jul 9, 2017Jul 9, 2017

    • ob-airtable

      Public
      Airtable python client
      Python
      •0•1•0•0•Updated Jun 29, 2017Jun 29, 2017

    • igv-server

      Public
      Dynamic IGV server linked to Airtable and S3
      Python
      •
      MIT License
      •0•1•0•0•Updated May 13, 2017May 13, 2017

    • knowledge-repo

      Public
      A next-generation curated knowledge sharing platform for data scientists and other technical professions.
      Python
      •
      Apache License 2.0
      •688•0•0•0•Updated Feb 11, 2017Feb 11, 2017

    • bioit

      Public
      Workflow toy example to accompany 2016 Bio-IT talk
      Python
      •
      Apache License 2.0
      •3•4•1•0•Updated Apr 4, 2016Apr 4, 2016