Code

Adv+ac/phylogenetic trees#3255

Code

Merged

antonydellavecchia merged 57 commits intooscar-system:masteroscar-system/Oscar.jl:masterfrom andreicomaneci:adv+ac/phylogenetic-treesandreicomaneci/Oscar.jl:adv+ac/phylogenetic-treesCopy head branch name to clipboardFeb 13, 2024

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Commits

Commits on Nov 6, 2023

• Some helpful functions for MPI meeting

  antonydellavecchia

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  e2cd3e4

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Commits on Nov 10, 2023

• phylogenetic trees

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Commits on Nov 13, 2023

• some clean up

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Commits on Jan 25, 2024

• get properties with julia types

  

  Andrei Comaneci

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• Tropical median consensus added

  

  Andrei Comaneci

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Commits on Feb 1, 2024

• export consensus

  andreicomaneci

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• docs for phylo functions

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• doc tropical median consensus

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• tropical_median_consensus to md file

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• add intro doc phylogenetics

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• Merge remote-tracking branch 'origin/master' into adv+ac/phylogenetic-trees

  antonydellavecchia

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• fix conflict

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• added some test skeleton and some docs

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• Merge branch 'phylo-tests' into adv+ac/phylogenetic-trees

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• remove doc for now

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• added more stuff to tests

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• Merge branch 'phylo-tests' into adv+ac/phylogenetic-trees

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• Merge branch 'master' into adv+ac/phylogenetic-trees

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• add fix for QQField matrix type

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• Merge remote-tracking branch 'andrei/adv+ac/phylogenetic-trees' into adv+ac/phylogenetic-trees

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  cee3495

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• fix printing

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• fix tests

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• eliminate duplicate in exports.jl

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• remove the unused param T

  andreicomaneci

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• change where T in Varargs{phylo}

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• removed spaces around where

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• change deprecated where

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• removed undefined method from exports

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Commits on Feb 2, 2024

• this might fix the export issues

  antonydellavecchia

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  8ac80ab

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• trying to fix arg types

  antonydellavecchia

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• fixing vararg

  antonydellavecchia

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• Merge remote-tracking branch 'andrei/adv+ac/phylogenetic-trees' into adv+ac/phylogenetic-trees

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Commits on Feb 3, 2024

• removed swp file

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• add undirected adjacency

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• Merge branch 'adv+ac/phylogenetic-trees' of github.com:andreicomaneci/Oscar.jl into adv+ac/phylogenetic-trees

  andreicomaneci

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• i think this might work

  antonydellavecchia

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• remove vararg function

  andreicomaneci

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• trying again with signature

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• use splat

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Commits on Feb 6, 2024

• adjacency_tree returns a directed graph now

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• update tests

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• Merge remote-tracking branch 'origin/master' into adv+ac/phylogenetic-trees

  antonydellavecchia

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• makes some type and signature fixes and adjustments to tests

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• Merge remote-tracking branch 'andrei/adv+ac/phylogenetic-trees' into adv+ac/phylogenetic-trees

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• Revert "Merge remote-tracking branch 'andrei/adv+ac/phylogenetic-trees' into adv+ac/phylogenetic-trees"

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• moves graph from edges up out of phylo trees section

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Commits on Feb 7, 2024

• some restructuring

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• Revert "some restructuring"

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• new phylogenetic trees file

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• returning graph from edges to the bottom of file + add include

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• Update src/Combinatorics/Graphs/functions.jl

  antonydellavecchia

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• removed swp file

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Commits on Feb 9, 2024

• Merge branch 'master' into adv+ac/phylogenetic-trees

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• Update src/Combinatorics/Graphs/functions.jl

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• updates from review comments

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• make Phylogenetic tree immutable

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• Apply suggestions from code review

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  and

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