docs: improve lfc_threshold example

owkin · Sep 7, 2023 · bc41204 · bc41204
1 parent e226692
commit bc41204
Showing 1 changed file with 8 additions and 3 deletions.
diff --git a/examples/plot_minimal_pydeseq2_pipeline.py b/examples/plot_minimal_pydeseq2_pipeline.py
@@ -252,14 +252,19 @@
 
 # %%
 # The results are then stored in the ``results_df`` attribute (``stat_res.results_df``).
+
 # %%
+# Optional: threshold-based tests
+# """"""""""""""""""""""""""""""""
+#
 # The user can specify a (log2) log fold change under the null hypothesis and an
 # alternative hypothesis to re-compute Wald statistics and p-values.
 # The alternative hypothesis corresponds to what the user wants to find rather than the
-# null hypothesis. It can take one of ["greaterAbs", "lessAbs", "greater", "less"].
-#
+# null hypothesis. It can take one of the values
+# ``["greaterAbs", "lessAbs", "greater", "less"]``.
+
 stat_res.summary(lfc_null=0.1, alt_hypothesis="greaterAbs")
-stat_res.plot_MA()
+stat_res.plot_MA(s=20)
 
 # %%
 # LFC shrinkage