Code

Add impg partition command#34

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AndreaGuarracino merged 20 commits intomainpangenome/impg:mainfrom subcommand_partitioningpangenome/impg:subcommand_partitioningCopy head branch name to clipboardDec 27, 2024

+651-39

Commits

Commits on Dec 21, 2024

• empty partition command

  AndreaGuarracino

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  2ee3240

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Commits on Dec 23, 2024

• wip

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Commits on Dec 24, 2024

• it works!

  AndreaGuarracino

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  22cae1d

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• fix merge range

  AndreaGuarracino

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  f045920

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• store and manage IDs not Strings

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• use buffered writing for partition files

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• in-place merge

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• natord

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Commits on Dec 25, 2024

• refactor merge_overlaps function for improved readability and performance

  AndreaGuarracino

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  22dbf5d

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• SortedRanges everywhere. query_transitive takes the mask in input now

  AndreaGuarracino

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• add merge_distance argument to partition_alignments for configurable overlap merging

  AndreaGuarracino

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• make the partitioning deterministic

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• optimize new windows creation

  AndreaGuarracino

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• memory tweak

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Commits on Dec 26, 2024

• batch insertions WIP

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• Merge branch 'main' into subcommand_partitioning

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• fix

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• partitioning code in a dedicate file

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  c066e79

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• extend short sequences just enough; cleaning

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  f2115ab

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Commits on Dec 27, 2024

• fix: ensure newline at end of Cargo.toml

  AndreaGuarracino

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