Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

added sample irida_next sample field option #140

Open
wants to merge 32 commits into
base: dev
Choose a base branch
from
Open

added sample irida_next sample field option #140

wants to merge 32 commits into from

Commits on Oct 24, 2024

  1. added sample irida_next sample field option

    @mattheww95
    mattheww95 committed Oct 24, 2024
    Configuration menu
    Copy the full SHA
    365f47b View commit details
    Browse the repository at this point in the history

  2. identified sticking point for sample names not being passed to the ir… 

    …idanext config
    @mattheww95
    mattheww95 committed Oct 24, 2024
    Configuration menu
    Copy the full SHA
    7edf2aa View commit details
    Browse the repository at this point in the history

Commits on Oct 28, 2024

  1. updated iridanext external name id

    @mattheww95
    mattheww95 committed Oct 28, 2024
    Configuration menu
    Copy the full SHA
    351a8f1 View commit details
    Browse the repository at this point in the history

  2. updated changelog and docs

    @mattheww95
    mattheww95 committed Oct 28, 2024
    Configuration menu
    Copy the full SHA
    acdb884 View commit details
    Browse the repository at this point in the history

  3. udpated samples sheet names

    @mattheww95
    mattheww95 committed Oct 28, 2024
    Configuration menu
    Copy the full SHA
    dcdce6d View commit details
    Browse the repository at this point in the history

  4. updated inx id parsing

    @mattheww95
    mattheww95 committed Oct 28, 2024
    Configuration menu
    Copy the full SHA
    fd4ea24 View commit details
    Browse the repository at this point in the history

  5. updated sample sheet parsing

    @mattheww95
    mattheww95 committed Oct 28, 2024
    Configuration menu
    Copy the full SHA
    0d81ebf View commit details
    Browse the repository at this point in the history

Commits on Oct 29, 2024

  1. updated tests

    @mattheww95
    mattheww95 committed Oct 29, 2024
    Configuration menu
    Copy the full SHA
    c036fb5 View commit details
    Browse the repository at this point in the history

Commits on Oct 31, 2024

  1. updating commits for feedback

    @mattheww95
    mattheww95 committed Oct 31, 2024
    Configuration menu
    Copy the full SHA
    6cb6d8c View commit details
    Browse the repository at this point in the history

  2. updated samplesheets

    @mattheww95
    mattheww95 committed Oct 31, 2024
    Configuration menu
    Copy the full SHA
    db34308 View commit details
    Browse the repository at this point in the history

  3. updated sample sheet name

    @mattheww95
    mattheww95 committed Oct 31, 2024
    Configuration menu
    Copy the full SHA
    0c6e6d1 View commit details
    Browse the repository at this point in the history

  4. updated external_id parsing, tests will fail as path locations need t… 

    …o be updated
    @mattheww95
    mattheww95 committed Oct 31, 2024
    Configuration menu
    Copy the full SHA
    d1e5609 View commit details
    Browse the repository at this point in the history

Commits on Nov 1, 2024

  1. updated output of flattened sample reports

    @mattheww95
    mattheww95 committed Nov 1, 2024
    Configuration menu
    Copy the full SHA
    a48fb95 View commit details
    Browse the repository at this point in the history

  2. fixed erroneous comment

    @mattheww95
    mattheww95 committed Nov 1, 2024
    Configuration menu
    Copy the full SHA
    39c8505 View commit details
    Browse the repository at this point in the history

Commits on Nov 5, 2024

  1. updated sample field orders

    @mattheww95
    mattheww95 committed Nov 5, 2024
    Configuration menu
    Copy the full SHA
    14653fb View commit details
    Browse the repository at this point in the history

  2. updated logic for renaming sample id

    @mattheww95
    mattheww95 committed Nov 5, 2024
    Configuration menu
    Copy the full SHA
    9c0bad4 View commit details
    Browse the repository at this point in the history

Commits on Nov 6, 2024

  1. updated sample parsing

    @mattheww95
    mattheww95 committed Nov 6, 2024
    Configuration menu
    Copy the full SHA
    c8827fe View commit details
    Browse the repository at this point in the history

  2. updated docs, changelog and nextflow_schema.json

    @mattheww95
    mattheww95 committed Nov 6, 2024
    Configuration menu
    Copy the full SHA
    db5f420 View commit details
    Browse the repository at this point in the history

  3. updated test cases

    @mattheww95
    mattheww95 committed Nov 6, 2024
    Configuration menu
    Copy the full SHA
    52af4a9 View commit details
    Browse the repository at this point in the history

  4. updating inputcheck tests

    @mattheww95
    mattheww95 committed Nov 6, 2024
    Configuration menu
    Copy the full SHA
    eb75969 View commit details
    Browse the repository at this point in the history

  5. added missing files

    @mattheww95
    mattheww95 committed Nov 6, 2024
    Configuration menu
    Copy the full SHA
    45ce5a2 View commit details
    Browse the repository at this point in the history

  6. updated tests

    @mattheww95
    mattheww95 committed Nov 6, 2024
    Configuration menu
    Copy the full SHA
    eec62b3 View commit details
    Browse the repository at this point in the history

Commits on Nov 7, 2024

  1. fixed failing tests

    @mattheww95
    mattheww95 committed Nov 7, 2024
    Configuration menu
    Copy the full SHA
    733db44 View commit details
    Browse the repository at this point in the history

  2. updated tests

    @mattheww95
    mattheww95 committed Nov 7, 2024
    Configuration menu
    Copy the full SHA
    71260a9 View commit details
    Browse the repository at this point in the history

  3. fixed my own mistakes

    @mattheww95
    mattheww95 committed Nov 7, 2024
    Configuration menu
    Copy the full SHA
    3c4e1c4 View commit details
    Browse the repository at this point in the history

  4. fixed failing test

    @mattheww95
    mattheww95 committed Nov 7, 2024
    Configuration menu
    Copy the full SHA
    738943b View commit details
    Browse the repository at this point in the history

Commits on Nov 8, 2024

  1. swapped external_id and id

    @mattheww95
    mattheww95 committed Nov 8, 2024
    Configuration menu
    Copy the full SHA
    b1e60dd View commit details
    Browse the repository at this point in the history

  2. updating information before the weekend

    @mattheww95
    mattheww95 committed Nov 8, 2024
    Configuration menu
    Copy the full SHA
    70d0291 View commit details
    Browse the repository at this point in the history

Commits on Nov 12, 2024

  1. fixed stupid name issue report keys not found

    @mattheww95
    mattheww95 committed Nov 12, 2024
    Configuration menu
    Copy the full SHA
    6ba57b0 View commit details
    Browse the repository at this point in the history

  2. fixed failig test case

    @mattheww95
    mattheww95 committed Nov 12, 2024
    Configuration menu
    Copy the full SHA
    a2c56a8 View commit details
    Browse the repository at this point in the history

  3. updated changelog

    @mattheww95
    mattheww95 committed Nov 12, 2024
    Configuration menu
    Copy the full SHA
    a1c3f3e View commit details
    Browse the repository at this point in the history

  4. updated changelog

    @mattheww95
    mattheww95 committed Nov 12, 2024
    Configuration menu
    Copy the full SHA
    899e35b View commit details
    Browse the repository at this point in the history