Bioptimistic

Dynamics is the core nature of most, if not all, things; at least for every instance of moving things. Bioptim was restrained to one type of dynamics and it made it sad. How can I describe the world if I cannot define my own dynamics, it was saying. Don't be sad no more, Bioptim, 'cause now, all dynamics are at your door! This new release disconnect biorbd from the core of bioptim allowing for arbitrary dynamics to be implemented. This is exciting! This opens bioptim to a lot of new usage! We are so optimist with what you can bring to the world that I'd say we are bioptimistic!

What's Changed

• Added the capability to apply fatigue directly to joint torque by @pariterre in #542
• [RTR] Issue#550 correction by @rapidnico in #552
• [RTR] more detailed detailed costs by @Ipuch in #545
• [RTR] integration rule tested in collocation by @Ipuch in #546
• [RTR] noise magnitude controled for each decision variable by @Ipuch in #553
• [RTR] SQP method interface by @EveCharbie in #556
• Update README.md by @fbailly in #558
• Github actions pot and fixing all the PRs by @Ipuch in #565
• Multi-start module by @EveCharbie in #555
• [RTR] Implicit defect type for muscles by @Ipuch in #561
• Allowed for bioviz 2.2.0 as the changes don't impact bioptim by @pariterre in #566
• [RTR] Creation of to_noised_initial_guess function by @rapidnico in #560
• [RTR] Fix target size with multi threads by @AntoineLeroy in #574
• [RTM] SQP test by @EveCharbie in #569
• [RTM] multi-start values testing by @EveCharbie in #570
• [RTM] Multi-model (phase mapping) by @EveCharbie in #548
• [RTR] Check Conditioning by @Julo0 in #573
• [RTR] correction of graphs for mapped tau by @lsechoir in #582
• [RTR] Model interface for a wider use of bioptim by @Ipuch in #581
• [WIP] Variable scaling by @EveCharbie in #572
• [RTR] inverse defects on joint acceleration driven by @Ipuch in #577
• [RTR] updating to numpy 1.24 by @Ipuch in #590
• Update README.md by @Ipuch in #589
• [RTR] split final MHE save by @Ipuch in #592
• Fix variable naming by @Ipuch in #597
• Partly addressing QandQdotBounds Issues by @Ipuch in #599
• Changed name of clear_penalty to ensure_penalty_sanity by @pariterre in #600
• [WIP] Passive Torque by @AntoineLeroy in #584
• setup install fix by @Ipuch in #602
• [RTM] add error for model path type by @AntoineLeroy in #605
• release checklist by @Ipuch in #607
• Fixed the versions by @pariterre in #608

New Contributors

• @AntoineLeroy made their first contribution in #574
• @Julo0 made their first contribution in #573
• @lsechoir made their first contribution in #582

Full Changelog: Release_2.3.0...Release_3.0.0