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IMP: migrate types/formats/transformers from types-genomics #309

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Add stuff to setup.py
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Oddant1 committed Feb 13, 2024
commit fd995687c9f502080bb9159162ed4199d914635c
37 changes: 36 additions & 1 deletion setup.py
Original file line number Diff line number Diff line change
@@ -47,7 +47,42 @@
'data/single-end-two-sample-data2/*',
'data/single-end-two-sample-data3/*'],
'q2_types.sample_data.tests': ['data/*'],
'q2_types.tree.tests': ['data/*']
'q2_types.tree.tests': ['data/*'],
'q2_types.per_sample_data.tests':
['data/*',
'data/mags/*/*', 'data/mags/*/*/*',
'data/manifests/*', 'data/contigs/*',
'data/diamond_hit/*',
'data/bowtie/*/*', 'data/bowtie/*/*/*/*', 'data/bowtie/*/*/*'],
'q2_types.feature_data_mag.tests':
['data/*', 'data/*/*',
'data/mags-fa/*', 'data/mags-fasta/*'],
'q2_types.genome_data.tests':
['data/*/', 'data/genes-with-prefix/*',
'data/genes-with-suffix/*', 'data/genes-with-wrong-prefix/*',
'data/loci-invalid/*', 'data/loci-with-prefix/*',
'data/loci-with-suffix/*', 'data/loci-with-wrong-prefix/*',
'data/ortholog/*', 'data/proteins-with-suffix/*',
'data/proteins-with-prefix/*',
'data/proteins-with-wrong-prefix/*',
],
'q2_types.kraken2.tests': [
'data/*',
'data/kraken2-db/*',
'data/bracken-db/*',
'data/outputs-single/*',
'data/outputs-reads/*/*',
'data/outputs-contigs/*',
'data/outputs-mags/*/*',
'data/reports-single/*',
'data/reports-reads/*/*',
'data/reports-mags/*/*',
'data/db-reports/**/*'
],
'q2_types.kaiju.tests':
['data/*', 'data/db-valid/*'],
'q2_types.reference_db.tests':
['data/*', 'data/*/*', 'data/*/*/*'],
},
zip_safe=False,
)
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