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Seun Cell Id V2 #93

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Aug 1, 2023
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74 changes: 52 additions & 22 deletions src/widgets/bulb_service.ts
Original file line number Diff line number Diff line change
Expand Up @@ -155,29 +155,59 @@ export class BulbService {

// const dataState: BulbService['statuses'] = {};
const rawCells: BulbService['statuses'] = {};
for (const cell of cellInfo) {

const keylist = ['cell_id', 'proofreading'];
const mappedResponse: any = {};
for (let i = 0; i < cellInfo.length; i++) {
const cell = cellInfo[i];
if (cell.status === 'fulfilled') {
const raw =
await (<{status: string; value: any;}>cell).value.text();
const data = JSONBS.parse(raw);
if (data.pt_root_id) {
const indicies = Object.keys(data.pt_root_id);
indicies.map((key: any) => {
const sid = data.pt_root_id[key];
if (!rawCells[sid]) rawCells[sid] = this.statuses[sid];
rawCells[sid].state =
Object.keys(data).reduce((prev: any, curr: string) => {
prev[curr] = data[curr][key];
return prev;
}, rawCells[sid].state || {});
const {tag, proofread} = rawCells[sid].state;
rawCells[sid].status = proofread === 't' ?
(tag ? 'complete' : 'unlabeled') :
'incomplete';
});
}
mappedResponse[keylist[i]] = JSONBS.parse(
await (<{status: string; value: any;}>cell).value.text());
}
}

Object.entries(mappedResponse).forEach((pkvp: any) => {
const key = pkvp[0];
const data = pkvp[1];

if (data.pt_root_id) {
const states: any = {};
const props = Object.keys(data);
Object.entries(data.pt_root_id).forEach((kvp: any) => {
const obj: any = {};
const sid = kvp[1];
props.forEach((prop: string) => {
obj[prop] = data[prop][kvp[0]];
});
if (states[sid]) {
states[sid][key].push(obj);
} else {
states[sid] = {[key]: [obj]};
}
});
Object.entries(states).forEach((kvp: any) => {
const sid = kvp[0];
const state: any = kvp[1];
if (!rawCells[sid]) rawCells[sid] = this.statuses[sid];
rawCells[sid].state = {...rawCells[sid].state, ...state};
let tag = rawCells[sid].state.cell_id;
let proofread = rawCells[sid].state.proofreading;
if (tag && tag.length) {
tag = tag[tag.length - 1].tag;
}
if (proofread && proofread.length) {
proofread = proofread[proofread.length - 1].proofread;
}

rawCells[sid].status = proofread === 't' ?
(tag ? 'complete' : 'unlabeled') :
'incomplete';
});
}
});



this.statuses = {...this.statuses, ...rawCells};
const values = Object.keys(rawCells);

Expand Down Expand Up @@ -404,8 +434,8 @@ export class BulbService {
handleDialogOpen, host, segmentIDString, currentTimeStamp,
{...state, paramStr, linkTS});

const {tag} = <any>(state || {});
let cellIDButtons = tag ?
const {cell_id} = <any>(state || {});
let cellIDButtons = cell_id && cell_id.length ?
[
['Details', 'blue', details[2]],
['Add New Identification', 'purple', identify[2]]
Expand Down
35 changes: 29 additions & 6 deletions src/widgets/cell_detail.ts
Original file line number Diff line number Diff line change
Expand Up @@ -102,7 +102,8 @@ export class CellDetailDialog extends Overlay {
`No existing identification can be found for this cell.`, cancel);
return;
}
const {tag, paramStr, linkTS} = <any>(this.stateInfo || {});
const {cell_id, paramStr, linkTS} = <any>(this.stateInfo || {});
const tags = cell_id.sort((a: any, b: any) => b.created - a.created);
const br = () => document.createElement('br');
const apiURL = `${this.host}/neurons/api/v1/cell_identification`;
const sub = this.makeButton({
Expand All @@ -116,13 +117,35 @@ export class CellDetailDialog extends Overlay {
}
});

if (tag) {
if (tags && tags.length > 0) {
this.title.innerText = 'Cell Identification';
this.infoField =
this.insertField({content: tag, type: 'textarea', disabled: true});
this.infoField.classList.add('rounded-input', 'large');

this.description = document.createElement('table');
/*let rows =
[{user_name: 'Marked by', tag: 'Cell Identification'}, ...tags];*/
let rows =
[{created: 'Created', tag: 'Label', user_name: 'Marked by'}, ...tags];
let thead = document.createElement('thead');
let tbody = document.createElement('tbody');
rows.forEach((tag: any, i: number) => {
const row = document.createElement('tr');
const created = document.createElement(`${i ? 'td' : 'th'}`);
const user = document.createElement(`${i ? 'td' : 'th'}`);
const tagTD = document.createElement(`${i ? 'td' : 'th'}`);
created.innerText = i ?
(new Date(tag.created)).toLocaleString('en-US', {hour12: false}) :
tag.created;
user.innerText = tag.user_name;
tagTD.innerText = tag.tag;
row.append(created, tagTD, user);
(i ? tbody : thead).append(row);
});
this.description.append(thead, tbody);

this.description.classList.add(
'rounded-input', 'large', 'cell_identification');
this.form.append(
this.title, this.infoField, br(), br(), sub, ' ', cancel);
this.title, this.description, br(), br(), sub, ' ', cancel);

let modal = document.createElement('div');
this.content.appendChild(modal);
Expand Down
21 changes: 20 additions & 1 deletion src/widgets/cell_identification.css
Original file line number Diff line number Diff line change
Expand Up @@ -11,4 +11,23 @@
outline: none;
background-color: transparent;
color: white;
}
}

table.cell_identification.rounded-input.large {
border-collapse: collapse;
width: 600px;
height: 150px;
max-width: 600px;
max-height: 450px;
}

.cell_identification td, .cell_identification th {
padding-left: 120px;
}
.cell_identification td:first-child, .cell_identification th:first-child {
padding-left: 0px;
}

.cell_identification tbody tr{
border-top: 1px solid #eeeeee77;
}
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