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Draft bed2zarr code #281

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Draft bed2zarr code #281

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Commits on Sep 17, 2024

  1. Draft bed2zarr code 

    Draft code to convert Bed3-format to Zarr.
    @percyfal
    percyfal committed Sep 17, 2024
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  2. Fix bed2zarr call

    @percyfal
    percyfal committed Sep 17, 2024
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  3. Rename zarr_field to bed_array

    @percyfal
    percyfal committed Sep 17, 2024
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Commits on Sep 18, 2024

  1. Refactor bed2zarr code base 

    - use pandas for reading
- write to isolated zarr archive
- map BED columns to arrays named after BED specification (hts-specs)
    @percyfal
    percyfal committed Sep 18, 2024
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Commits on Sep 20, 2024

  1. Add initial support for BED3-BED12 

    - guess BED file type
- add draft schema
- add tests
    @percyfal
    percyfal committed Sep 20, 2024
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  2. Minor refactorization

    @percyfal
    percyfal committed Sep 20, 2024
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Commits on Oct 14, 2024

  1. Simplify main bed2zarr, encode features and contigs as ints 

    - simplification of main bed2zarr function
- encode features, contigs as Categories
- add specs for BED9-BED12
    @percyfal
    percyfal committed Oct 14, 2024
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Commits on Oct 15, 2024

  1. Add tests and withdraw support for BED9, BED12

    @percyfal
    percyfal committed Oct 15, 2024
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  2. Fix lint errors

    @percyfal
    percyfal committed Oct 15, 2024
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  3. Add pandas dependency

    @percyfal
    percyfal committed Oct 15, 2024
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  4. Update du stats

    @percyfal
    percyfal committed Oct 15, 2024
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