MRG: add generic support for any type of sketch collection as query or database #898

	name: "maturin build"
	on:
	pull_request:
	push:
	branches: [latest]
	jobs:
	tests_on_linux:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	with:
	fetch-depth: 0

	- name: cache conda
	uses: actions/cache@v4
	env:
	CACHE_NUMBER: 1
	with:
	path: ~/conda_pkgs_dir
	key:
	${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }}

	- name: cache rust
	uses: Swatinem/rust-cache@v2

	- name: setup conda
	uses: conda-incubator/setup-miniconda@v3
	with:
	auto-update-conda: true
	python-version: 3.12
	channels: conda-forge,bioconda
	miniforge-variant: Mambaforge
	miniforge-version: latest
	use-mamba: true
	mamba-version: "*"
	activate-environment: sourmash_dev
	auto-activate-base: false
	# use-only-tar-bz2: true

	- run: conda info
	- run: conda list
	- run: conda config --show

	- run: mamba search rust

	- name: install dependencies
	shell: bash -l {0}
	run: mamba install rust==1.75.0

	- name: install dependencies 2
	shell: bash -l {0}
	run: mamba install compilers maturin pytest pandas

	- name: Run cargo fmt
	run: cargo fmt --all -- --check --verbose

	- name: build
	shell: bash -l {0}
	run: make

	- name: test
	shell: bash -l {0}
	run: pytest

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