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thh32 authored Jan 16, 2020
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# Pig intestinal bacterial collection
# Extensive cultivation of the pig gut microbiome identifies novel bacterial diversity and functions and enables tailored functional studies

![logo](/images/pibac_logo.png)

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| Description | Size | Link |
|--|--|--|
| representave hqMAGs (n=617) | 400 MB | [PIBAC-hqMAGs-dereplicated_genomes.tar.gz](https://onedrive.live.com/download?cid=36ADEB4B3D109F6F&resid=36ADEB4B3D109F6F%2138671&authkey=AO-S48yf1OvVk8U) |
| representative hqMAGs (n=617) | 400 MB | [PIBAC-hqMAGs-dereplicated_genomes.tar.gz](https://onedrive.live.com/download?cid=36ADEB4B3D109F6F&resid=36ADEB4B3D109F6F%2138671&authkey=AO-S48yf1OvVk8U) |
| all mMAGs (n=1,780) | 1 GB | [PIBAC-mMAGs.tar.gz](https://onedrive.live.com/download?cid=36ADEB4B3D109F6F&resid=36ADEB4B3D109F6F%2138674&authkey=APp2rvi3v3pLnts) |
| Annotations by CheckM, dRep-Clustering, GTDB-Tk | 1 MB | [MAG-annotation_CheckM_dRep_GTDB-Tk.tar.gz](https://onedrive.live.com/download?cid=36ADEB4B3D109F6F&resid=36ADEB4B3D109F6F%2138673&authkey=AC-8-4mBr0U5zjg) |

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Tree was constucted from GTDB-Tk maker genes, including GTDB-Tk taxonomy information and ANI scores to the GTDB reference genomes.

![tree](/images/pibac_tree_mag_isolates_v2.png)
![tree](/images/Fig-4_GitHub.png)

## Pipelines:

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