Code

Bie fix#60

Code

Merged

ctr26 merged 22 commits intomasteruhlmanngroup/bioimage_embed:masterfrom bie_fixuhlmanngroup/bioimage_embed:bie_fixCopy head branch name to clipboardAug 15, 2024

+224-121

Commits

Commits on Aug 14, 2024

• [bug] notebooks cli stuff is erroring, adding tests to confirm

  ctr26

  committed
  d7a259b

• [bug] issue was the mess of dictionaries and model outputs, now consolidated

  ctr26

  committed
  1fe05a4

• [bug] updated shape_embed to match (new) style

  ctr26

  committed
  d06194e

Commits on Aug 15, 2024

• [init] notebook example that "should" work

  ctr26

  committed
  92ce656

• [feat] adding jupytext

  ctr26

  committed
  01631aa

• [bug] collate_fn doesn't work with num_workers > 0

  ctr26

  committed
  d90317c

• [bug] removing collate, fixing path validation

  ctr26

  committed
  72c91fd

• [bug] default augs need a float tensor

  ctr26

  committed
  9044247

• [feat] adding fit check to full check

  ctr26

  committed
  0539c08

• [feat] adding simple.py

  ctr26

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  193c189

• [feat] cleaning up cli tests

  ctr26

  committed
  8a0c5f4

• [feat] adding jupytext

  ctr26

  committed
  f0bff4a

• [feat] adding jupytext toml

  ctr26

  committed
  fdb29c7

• [feat] adding autoencoder prose

  ctr26

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  bb72314

• [fix] removing all the funny loss,model_output logic

  ctr26

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  f67b815

• [fix] removing the loss_function stuff and replacing entirely with eval_step

  ctr26

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  fec2ee3

• [bug] needs to be super() for eval

  ctr26

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  35820cf

• [fix] improved cli tests

  ctr26

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  f1218a5

• [fix] variational_loss is handled per *_step now, might rethink later

  ctr26

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  ff4a106

• [fix] extra cfg

  ctr26

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  12764b0

• [feat] adding model_predict_test

  ctr26

  committed
  b92991e

• [fix] removing expensive function

  ctr26

  committed
  5f4f449