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Create interactive_pampa.xml #168

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Create interactive_pampa.xml #168

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94fe574
EU: LOCALONLY Fix FTP URL in UI
gmauro Jul 23, 2020
78faa2a
EU: Favico
hexylena May 17, 2019
e38f7c6
EU: Expand velvet kmer values
hexylena May 15, 2019
c2325a9
EU: LOCALONLY fix loading of tools
hexylena Dec 11, 2018
e8335f5
EU: Add local phinch site in lieu of GIE
gmauro Jul 23, 2020
d954c79
EU: add SEEK data source
bgruening Sep 8, 2019
97422ca
EU: Adding support for juicer hic and test data for it (#49)
gmauro Jul 23, 2020
9ab22f5
add OMICS-DI
bgruening Jan 31, 2021
88c5b6b
Update recommendations.py
anuprulez Mar 6, 2023
1380505
EU: Add ARC Gitlab File Source Plugin
davelopez Mar 8, 2023
ca13546
Temporary disable Release Notes icon
davelopez Mar 15, 2023
18c90ba
backport new cellxgene tool
bgruening Mar 16, 2023
6011cff
add interactive_blobtoolkit.xml
bgruening Mar 24, 2023
9790105
change name of the interactive blobtool
bgruening Mar 24, 2023
5225c34
add interactive_blobtoolkit.xml
bgruening Mar 24, 2023
2128b21
change name of the interactive blobtool
bgruening Mar 24, 2023
db58507
updaged pangeo notebook and added pangeo ml-notebook for machine lear…
annefou Mar 26, 2023
6139a7a
Update MetaShARK for 1.7.3 version ok on 22.05
yvanlebras Apr 3, 2023
3fe5b53
Create interactivetool_audiolabeler.xml
yvanlebras Apr 3, 2023
4925da4
Fix issue with d3 js tree for tool recommendations (#153)
anuprulez Apr 5, 2023
1d7c2e4
Update interactive Blobtoolkit folder structure (#158)
gallardoalba Apr 6, 2023
046dc6b
Add DIVAnd interactive tool (#160)
Marie59 Apr 28, 2023
c150228
Try fixing ITs callback
bgruening May 1, 2023
df5b6ec
Add support for visualizing HDF5 datasets. This contribution is split…
jarrah42 Jan 25, 2023
b3ef2ae
Fix lint warnings
jarrah42 Jan 25, 2023
c673130
Fix data api test. Ran make format.
jarrah42 Jan 25, 2023
7d9d53d
Fix OpenAPI linting. Remove unused dependencies.
jarrah42 Jan 25, 2023
38b0d7f
Add dependency to data package.
jarrah42 Jan 26, 2023
e721757
Fix failing tests.
jarrah42 Jan 26, 2023
73f5ec1
Fix mypy errors
jarrah42 Jan 26, 2023
467715b
Fix another linting problem.
jarrah42 Jan 30, 2023
3f70374
Fix problems loading dataset in some instances.
jarrah42 Feb 9, 2023
fd0dff4
Fix linting and add type to input settings.
jarrah42 Apr 3, 2023
9f49713
Update @h5web to 7.1.0
jarrah42 May 4, 2023
1a3f5e9
Update python version upper pin
dannon May 5, 2023
ef408cc
remove generated file from git
ElectronicBlueberry May 5, 2023
a6a6cbc
update gitignore
ElectronicBlueberry May 5, 2023
586272c
Fixes the parcel2 build for hdf5 viz when using node18. The underlying
dannon May 5, 2023
f3b2712
Update interactivetool_divand.xml
bgruening May 13, 2023
d26545a
update DIVAnd
bgruening May 15, 2023
a0cc7e5
Add scoop3 from FAIR EASE as IT
bgruening May 17, 2023
8b49204
add citations
bgruening May 17, 2023
437c3bb
Add hdfview interactive tool
TheoMathurin May 17, 2023
2f22e41
small edits
bgruening May 17, 2023
1e8bef3
Update interactivetool_hdfview.xml
bgruening May 17, 2023
c5a6b61
don't start application after the server
bgruening May 17, 2023
a374ca8
few more fixes to hdfview
bgruening May 17, 2023
13748f7
Add hdf4 support to hdfview tool
TheoMathurin May 21, 2023
71e867c
Merge pull request #164 from TheoMathurin/add-hdf4-support
bgruening May 24, 2023
8fffd56
Odv (#166)
Marie59 Jun 7, 2023
587db02
Create interactivetool_metashrimps.xml (#167)
yvanlebras Jun 9, 2023
11e2a48
Create interactive_pampa.xml
yvanlebras Jun 10, 2023
7072895
Update interactive_pampa.xml
yvanlebras Jun 10, 2023
c9bcecc
add &&
yvanlebras Jun 10, 2023
956f97f
Finalize a first operational version of the app
yvanlebras Jun 10, 2023
4076736
Update interactive_pampa.xml
yvanlebras Jun 10, 2023
b393a8c
Update interactive_pampa.xml
yvanlebras Jun 10, 2023
bf01b20
Update and rename interactive_pampa.xml to interactivetool_pampa.xml
bgruening Jun 10, 2023
3138efc
Update interactivetool_pampa.xml
bgruening Jun 10, 2023
17e81cd
Update interactivetool_pampa.xml
yvanlebras Jun 10, 2023
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6 changes: 4 additions & 2 deletions tools/interactive/interactivetool_pampa.xml
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
<tool id="interactive_tool_pampa" tool_type="interactive" name="pampa" version="0.0.1" profile="22.01">
<description>Performance Indicators of Marine Protected Areas for the management of coastal ecosystems, resources and their uses</description>
<description>occurences data analysis</description>
<requirements>
<container type="docker">ylebras/pampa:latest</container>
</requirements>
Expand All @@ -10,7 +10,9 @@
</entry_point>
</entry_points>
<command><![CDATA[
ln -s /srv/shiny-server/sample-apps/PAMPA/Results . &&
mkdir Results &&
mkdir /srv/shiny-server/sample-apps/PAMPA/Results/ &&
ln -s Results /srv/shiny-server/sample-apps/PAMPA/Results/ &&
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is this working? folder "Results" exist already as you do mkdir before

mkdir -p /var/log/shiny-server &&
chown shiny:shiny /var/log/shiny-server &&

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