Add agat sp alignment output style #124
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dorien-er
reviewed
Aug 29, 2024
| issue_tracker: https://github.com/NBISweden/AGAT/issues | ||
| repository: https://github.com/NBISweden/AGAT | ||
| references: | ||
| doi: 10.5281/zenodo.3552717 |
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| doi: 10.5281/zenodo.3552717 | |
| doi: https://doi.org/10.5281/zenodo.3552717 |
dorien-er
reviewed
Aug 29, 2024
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| The script takes a normal gtf/gff annotation format file and convert it | ||
| to gff3 alignment format. It means it add a structure of match / | ||
| match_part as relationship between the different features. |
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| The script takes a normal gtf/gff annotation format file and convert it | |
| to gff3 alignment format. It means it add a structure of match / | |
| match_part as relationship between the different features. | |
| The script takes a normal gtf/gff annotation format file and converts it to gff3 alignment format, adding a structure of match / match_part as relationship between the different features. |
dorien-er
reviewed
Aug 29, 2024
| arguments: | ||
| - name: --verbose | ||
| alternatives: [-v] | ||
| description: Verbose option to see the warning messages when parsing the gff file. |
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| description: Verbose option to see the warning messages when parsing the gff file. | |
| description: Add verbosity. |
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Description
Added agat_sp_alignment_output_style:
-vargumentIssue ticket number
Closes #xxxx
Checklist before requesting a review
I have performed a self-review of my code
Conforms to the Contributing guidelines
Proposed changes are described in the CHANGELOG.md
I have tested my code with
viash ns test --parallel -q <name or namespace>Check the correct box. Does this PR contain: