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Commits on Jul 1, 2023

• Merge pull request #3 from wbazant/0.4.2

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Commits on Jun 28, 2023

• Update dependency name to scikit-learn

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Commits on May 19, 2023

• Update README.md

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Commits on Nov 23, 2022

• Improve readme

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Commits on Apr 1, 2022

• install requires go in setup

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• Package for pip

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Commits on Feb 10, 2022

• Add num_alignments as a filter and output field

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Commits on Dec 6, 2021

• Explain what output types are upon error

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• x

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Commits on Dec 3, 2021

• Improve the readme

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Commits on Dec 2, 2021

• Add filter description to the readme

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• New output types - two reports

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Commits on Dec 1, 2021

• Move writing to its own module

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• Clean up the readme a bit

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Commits on Oct 12, 2021

• Daily snapshot

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Commits on Oct 11, 2021

• Readme snapshot

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Commits on Oct 4, 2021

• Discard near misses in same cluster

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• Some tests for transforming

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Commits on Oct 1, 2021

• Fix null case

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• Filter+transform for taxa based on taxon clusters

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• Test for MCL code

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Commits on Sep 30, 2021

• Fuzzy equals in a markers query, extra piece of information (num_markers_best_in_cluster) in the report

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• Build taxon clusters

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• Add marker clusters based on MCL

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Commits on Sep 29, 2021

• New report

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Commits on Sep 23, 2021

• Poka yoke about min MAPQ and using non-primary matches

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• Add filter based on identity

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• Tests for filtering the store

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• Filtering on num matches is done before counting

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Commits on Sep 22, 2021

• Add option to filter taxa using their secondary matches

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• Reports based on markers

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• Fix report

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• Better report query

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• Fix the query for when there are multiple alignments per read

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• Reports about multiple matches

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