package or namespace load failed for ‘caret’ in dyn.load(file, DLLpath = DLLpath, ...):

package or namespace load failed for ‘Hmisc’ in dyn.load(file, DLLpath = DLLpath, ...):

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

dependencies 'graph', 'Biostrings', 'seqLogo', 'doMC', 'Biobase', 'MassSpecWavelet', 'clustermq', 'marray', 'affy', 'limma', 'rnaturalearthhires', 'BiocVersion', 'dblog', 'ganalytics', 'starsdata', 'spDataLarge', 'argon2', 'unix', 'rgeos', 'Rcgmin', 'Rvmmin', 'Rgraphviz', 'rgdal', 'maptools', 'taxidata', 'cmdstanr', 'glmmADMB', 'snpStats', 'biomaRt', 'KEGGgraph', 'Rcampdf', 'Rpoppler', 'tm.lexicon.GeneralInquirer', 'rcom', 'RDCOMClient', 'lavaan.survey', 'ComplexHeatmap', 'INLA', 'globaltest', 'sylly.de', 'sylly.es', 'rsyslog', 'M3C', 'hoa', 'corpus.JSS.papers', 'cairoDevice', 'RGtk2', 'RandomFields', 'sangerseqR', 'RTCGA.rnaseq', 'ExactData', 'texPreview', 'gurobi', 'rrelaxiv', 'mail', 'IRanges', 'extraTrees', 'genefilter', 'sva', 'rhdf5', 'mixOmics', 'Icens' are not available

unknown option '--no-bulid-vignettes'

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'::' or ':::' import not declared from: 'ape'

'::' or ':::' import not declared from: 'ape'

'::' or ':::' import not declared from: 'ape'

'::' or ':::' import not declared from: 'ape'

'::' or ':::' import not declared from: 'ape'

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

dependencies ‘graph’, ‘Biostrings’, ‘seqLogo’, ‘Biobase’, ‘MassSpecWavelet’, ‘clustermq’, ‘marray’, ‘affy’, ‘limma’, ‘rnaturalearthhires’, ‘BiocVersion’, ‘dblog’, ‘ganalytics’, ‘starsdata’, ‘spDataLarge’, ‘argon2’, ‘rgeos’, ‘Rcgmin’, ‘Rvmmin’, ‘Rgraphviz’, ‘rgdal’, ‘maptools’, ‘R2wd’, ‘taxidata’, ‘cmdstanr’, ‘glmmADMB’, ‘snpStats’, ‘biomaRt’, ‘KEGGgraph’, ‘Rcampdf’, ‘tm.lexicon.GeneralInquirer’, ‘lavaan.survey’, ‘ComplexHeatmap’, ‘INLA’, ‘globaltest’, ‘sylly.de’, ‘sylly.es’, ‘M3C’, ‘hoa’, ‘corpus.JSS.papers’, ‘cairoDevice’, ‘RGtk2’, ‘RandomFields’, ‘sangerseqR’, ‘RTCGA.rnaseq’, ‘ExactData’, ‘texPreview’, ‘gurobi’, ‘rrelaxiv’, ‘RDCOMClient’, ‘mail’, ‘IRanges’, ‘extraTrees’, ‘genefilter’, ‘sva’, ‘rhdf5’, ‘mixOmics’, ‘Icens’ are not available

unknown option ‘--no-bulid-vignettes’

'::' or ':::' import not declared from: ‘ape’

'::' or ':::' import not declared from: ‘ape’

'::' or ':::' import not declared from: ‘ape’

'::' or ':::' import not declared from: ‘ape’

'::' or ':::' import not declared from: ‘ape’

'::' or ':::' import not declared from: ‘ape’

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

dependencies ‘graph’, ‘Biostrings’, ‘seqLogo’, ‘Biobase’, ‘MassSpecWavelet’, ‘clustermq’, ‘marray’, ‘affy’, ‘limma’, ‘rnaturalearthhires’, ‘BiocVersion’, ‘dblog’, ‘ganalytics’, ‘starsdata’, ‘spDataLarge’, ‘argon2’, ‘rgeos’, ‘Rcgmin’, ‘Rvmmin’, ‘Rgraphviz’, ‘rgdal’, ‘maptools’, ‘R2wd’, ‘taxidata’, ‘cmdstanr’, ‘glmmADMB’, ‘snpStats’, ‘biomaRt’, ‘KEGGgraph’, ‘Rcampdf’, ‘tm.lexicon.GeneralInquirer’, ‘lavaan.survey’, ‘ComplexHeatmap’, ‘INLA’, ‘globaltest’, ‘sylly.de’, ‘sylly.es’, ‘M3C’, ‘hoa’, ‘corpus.JSS.papers’, ‘cairoDevice’, ‘RGtk2’, ‘RandomFields’, ‘sangerseqR’, ‘RTCGA.rnaseq’, ‘ExactData’, ‘texPreview’, ‘gurobi’, ‘rrelaxiv’, ‘RDCOMClient’, ‘mail’, ‘IRanges’, ‘extraTrees’, ‘genefilter’, ‘sva’, ‘rhdf5’, ‘mixOmics’, ‘Icens’ are not available

'::' or ':::' import not declared from: ‘ape’

'::' or ':::' import not declared from: ‘ape’

'::' or ':::' import not declared from: ‘ape’

'::' or ':::' import not declared from: ‘ape’

'::' or ':::' import not declared from: ‘ape’