Change v1 workflow to v2 #9

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9 warnings

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Install dependencies

dependencies 'graph', 'Biostrings', 'seqLogo', 'doMC', 'Biobase', 'MassSpecWavelet', 'clustermq', 'marray', 'affy', 'limma', 'rnaturalearthhires', 'BiocVersion', 'dblog', 'ganalytics', 'starsdata', 'spDataLarge', 'argon2', 'unix', 'rgeos', 'Rcgmin', 'Rvmmin', 'Rgraphviz', 'rgdal', 'maptools', 'taxidata', 'cmdstanr', 'glmmADMB', 'snpStats', 'biomaRt', 'KEGGgraph', 'Rcampdf', 'Rpoppler', 'tm.lexicon.GeneralInquirer', 'rcom', 'RDCOMClient', 'lavaan.survey', 'ComplexHeatmap', 'INLA', 'globaltest', 'sylly.de', 'sylly.es', 'rsyslog', 'M3C', 'hoa', 'corpus.JSS.papers', 'cairoDevice', 'RGtk2', 'RandomFields', 'sangerseqR', 'RTCGA.rnaseq', 'ExactData', 'texPreview', 'gurobi', 'rrelaxiv', 'mail', 'IRanges', 'extraTrees', 'genefilter', 'sva', 'rhdf5', 'mixOmics', 'Icens' are not available

Check

unknown option '--no-bulid-vignettes'

Check